BAC Information

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BAC

Clone NameMSMg01-089C12
Chromosome1 (Build37)
Map Location 98,096,123 - 98,096,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C12.T7 (MSMg01no089_c12.b1)MSMg01-089C12.TJ (MSMg01no089_c12.g1)
ACCAG307727AG307728
length675694
length of high quality
(start - end)
289 (31 - 319)284 (55 - 338)
definitionCHROMAT_FILE: MSMg01no089_c12.b1 PHD_FILE: MSMg01no089_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:52 2005CHROMAT_FILE: MSMg01no089_c12.g1 PHD_FILE: MSMg01no089_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTTTGTTCTGCCCTGAGCCCCATTTTTTAATGGGG
TTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTTTATATATATTG
GGTATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGACTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGC
TTTGCAATTTCATGAGGTCCCATTTATTGATTCTTGATCTTACAGCATAA
GCCATTGCTGTTCTATTCAGGAATTTTTTCCCCTGTACCCATATCTTCGA
GGCTTACAGTGAGGAACCTATTTCTATTTCCCTCCCCCCCCCTCTACCTA
GCAGGTAATGAAAAGAGATGCATATACTCACTGCCAAACATAATATGTAT
TTGGGAAAAGAGAGTGATGTCACATCATCATGACAGTAATTCCACAGGAC
GACCTTCATAGTCAACTAATCTGAACAGCTGCTCTTTCCCACATACTGAA
TCTTCGCCTTTTGATCTTCTATGCCCTCGCAATTAGTTCCCCTTCTTATA
CTATATGATCCCCTTGCTCTTTATCTTCTGTTCTCCTATATAATGACACA
GTCCTCGCCCTAAATCCGCCATTTTATTCCCTTGTTTCCCCCAATTGGTT
GCCCTTTCTTCGTTCCGCTTCACCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATGGGCCATGTTCAGGAGAAGAGTCAGAATTTGAAGGAATGTAGA
TAGATAGATTTGTTGTAGCCCCTGATTATTAGTTTTTATCTGGATTGAAG
TGTTTTGCTAAATTCAACAAAGTGTATTTGAAATTGAAATAACCTTCTTT
GACCAGAAAGCAGCAGGTTCAAATTCAAATAACTGTCTTCTTCTATTTGA
GATATGCTATCAAAGGACATCTTTGTGATACATGAAGTTTGGTGCAAACA
TTATCTGCTTCAGTTAGCTCTGTCAGGCTGTTTTGGTGATATTTTATACC
CCACACCCCCCCCCAGGGTTGTTCATAGAACCTCAATAGAATCTTATGAT
ACCATCCTTGAAAAAAGTCTTTTCATTGAAAGGAGGTATCTCTGAGTCCA
ATGACTCCTGAAATTTGTAGGATAGTGACAGATATATCTCTGCATCCGGA
CAGGCACATCAATTATTCGTGCCACATCTTACCTCATCTTTTCTTAATAA
AAACCCATCACCCAGGAAAGAGACAATTCTTCTCTGCCATTCCTATTGCC
TTCAACACAATACTGAGCCCCCAAATTTTCCTACCATTTGATATTTTTAA
CCGTTTCCATTAAATATTCCCCTGCTCTATCCTTTTTACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c12.g1 MSMg01no089_c12.g1 CHROMAT_FILE:
MSMg01no089_c12.g1 PHD_FILE: MSMg01no089_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:52 2005
         (284 letters)



>mm_chr1_98095923_98096606
          Length = 684

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%), Gaps = 2/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgggccatgttcaggagaagagtcagaa-tttgaaggaatgtagatagatagatttgt 59
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 201 tatgggccatgttcaggagaagagtca-aactttgaaggaatgtagatagatagatttgt 259

                                                                       
Query: 60  tgtagcccctgattattagtttttatctggattgaagtgttttgctaaattcaacaaagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtagcccctgattattagtttttatctggattgaagtgttttgctaaattcaacaaagt 319

                                                                       
Query: 120 gtatttgaaattgaaataaccttctttgaccagaaagcagcaggttcaaattcaaataac 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 gtatttgaaattgaaataaccttctttgaccagaaagcagtaggttcaaattcaaataac 379

                                                                       
Query: 180 tgtcttcttctatttgagatatgctatcaaaggacatctttgtgatacatgaagtttggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 tgtcttcttctatttgagatatgctatcaaaggacatctttgtgatagatgaagtttggt 439

                                                        
Query: 240 gcaaacattatctgcttcagttagctctgtcaggctgttttggtg 284
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 gcaaacattagctgcttcagttagctctgtcaggctgttttggtg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)