BAC Information

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BAC

Clone NameMSMg01-089E14
Chromosome1 (Build37)
Map Location 14,611,800 - 14,611,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
Downstream geneMsc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E14.T7 (MSMg01no089_e14.b1)MSMg01-089E14.TJ (MSMg01no089_e14.g1)
ACCAG307825AG307826
length778788
length of high quality
(start - end)
145 (126 - 270)---
definitionCHROMAT_FILE: MSMg01no089_e14.b1 PHD_FILE: MSMg01no089_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:02 2005CHROMAT_FILE: MSMg01no089_e14.g1 PHD_FILE: MSMg01no089_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATCGCTTNTGCCCCNTTCCCTTCTCTTTTCCTTTTCTNNNCTCTCCAN
ANNGTTATCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
CGCGGAATTCTGCCCATTTCCCCTGGTGATAGGCCTGGAGTCTAGACATT
TCCTGCTGATGCCAAGGCTGCTGTTGTTTAACCAGAGTTAGAAGAGTCAG
TCTTACTCCCTGAGGGCAATCTGATCTGATGGCTAACTGTCAGCGTTGTC
TTCTACTTCTTGACTTTGGCAAGTGTATAGTAGACCACATCATCACAGGA
CACATGCACACTTTCTAATTGGTTAGTTTTGTATACACTCTGCCAAACAT
TTATATGGTGCATAGAGCAGATGTGCTTTTTATTTGTCGCTACTGCCTAA
CCTAGATTTGGGGTTTTTTTTTCACCCCCCCCCCCCCGCGATTTTTTTTT
CTATTATTTAGCCCCTATTCCCCCCCCCACAAACAGAACTTCCCTCTCTT
GCACCTTTACCCTGTTCCGCATTTCCTTCTATGTTTCCCGCCTCTTCACC
ACCCTCTACCTTATTCCCGCACCCTCTTACTTCCCTTTTTTTCCCTACCC
ACTTTTTTTCTTTCTTTTCCCTTGCCTTCCCCTTTGCCCTCTCCGTCCTT
TCTTATGCCCCCTTCCTCCTCTCTTTTGCTCTTCCTTTTCCTTTTGCCGC
TCTACCTTCCTTTTTCTTCGCTCCTTGTTGCCCTTTTTTCCCCTCTTCTT
TTCCCCCTATCCACCTTCCCCTCTACCC
NGTGGGGGTTTGTTTNCTTTTGGGCTTGTTTTTTTGGTTTCCTCTCTTAN
NNNNNCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATTAGAAGTTTCTCTTTA
GCATTCATTAGTTCTCGTTTTGAAATTGTGTAATAGAGCCCATGCAGACC
TACCATGAACAATAGCCACATAATACTGCTACACAGCATATGCCCAGGAA
AGAGCAAAGCCTTCCCTCCAGACACTATTTTCTGTACTTACTTGTGGCTA
TGTTTGATTCTGCCATGCTTCCTAAATAAGGACATTAGTTCAGCAACACT
GTCTGCTGCCATAGGTAAAAGGAGACTTGATTGCTCATCTTTCCCTGCTT
GATTTCCTCCCTTATTTTTTTTTTCTCTCCCCCCCCCCCTGTTTTATCCT
TAAAATTTCTTATTTCACTGTTATGCCTCCATTCATACTAATATCCATAT
TTTGGGTATATTTCTCTACGTTCTTTGTACAGCCATTTTTCGTCATATTA
CTTGTTACATAATTTATTACCCTTTTCACCTCTCACGCTACCTTTCCCCA
CTCTCCCACCATCCTCAATTGTTAACCATTTTCTTCCCCCCAGCACCATC
CGTCTTTTTTCTTCATCCCTTTCCTATTTTATTAACATTCCCCTCCACCG
TTTCCACGATTTTTTCCTTTCCCAATGCTATTGATTTACCCTATTCCCCT
TTGCAATTACCCCCACACTTTTCGCTATTTCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e14.b1 MSMg01no089_e14.b1 CHROMAT_FILE:
MSMg01no089_e14.b1 PHD_FILE: MSMg01no089_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:02 2005
         (145 letters)



>mm_chr1_14611600_14612144
          Length = 545

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgataggcctggagtctagacatttcctgctgatgccaaggctgctgttgtttaaccag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gtgataggcctggagtctagacatttcctgctgatgccaaggctgctgctgtttaaccag 260

                                                                       
Query: 61  agttagaagagtcagtcttactccctgagggcaatctgatctgatggctaactgtcagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttagaagagtcagtcttactccctgagggcaatctgatctgatggctaactgtcagcg 320

                                   
Query: 121 ttgtcttctacttcttgactttgg 144
           |||||||||| |||||||||||||
Sbjct: 321 ttgtcttctagttcttgactttgg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)