BAC Information

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BAC

Clone NameMSMg01-089K02
Chromosome1 (Build37)
Map Location 131,096,391 - 131,096,676
singlet/doubletsinglet
Overlap genenone
Upstream geneR3hdm1, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b, LOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089K02.T7 (MSMg01no089_k02.b1)MSMg01-089K02.TJ (MSMg01no089_k02.g1)
ACCAG308079AG308080
length686679
length of high quality
(start - end)
332 (20 - 351)289 (55 - 343)
definitionCHROMAT_FILE: MSMg01no089_k02.b1 PHD_FILE: MSMg01no089_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005CHROMAT_FILE: MSMg01no089_k02.g1 PHD_FILE: MSMg01no089_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCGGCGCTAAACGACTCCTATAGGGAGAGGTCCGCGGAATTCAACAGGA
ACTTGAAGCGGGAATAATTGCTTGCTAGCTTTTACATGATCATGCTTAGC
TGGATTTCTTACAAAACTGAGCTACCCGCACCTGCCTAGGGACAGTACCA
TCCACAGTGGGCTGAACCCTAGGGTATCAATTATCAACCATGATAATTCC
TTATAGGCATGCCTACCTGTCAATTTATCTCTAGCAATCCTTCAATCTAG
GTGTTTCTCTCAGATCAGTATATGCTGAGTCAAGTTGACAATTAAAGCTG
CCTAGGAGAGAACTGGAAAGACAACACATTCAATTGTCATGCTGTATCGT
GTACGGAACGCCACCACCAGAAAAGGCCTATGCATGTTCACTATAAAGAC
AATTTTAAATCTGTTTATAACATTTACGCTATTAATCCTATGATACAAGC
ATATTTTAAGTCATTTCACCATACTTAATACACTGATTTTATTTTTAATT
GGCTTAGTTTCTTAAAGACCAACTGCCCTCACGATAGCCTTCACCTCCCT
GTATAGTTCCAAATGATCCTAAACTTCTGAACTCTCTGCCTCTAACTCTT
AAATGCTTGGATTACACGCCTACCCTACTTTGCACTCTTGTCCGCTATTT
ACGCCCTCTATAATCTGACCTTAATACACATTCGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATGGAAGTTAAAATTAATAAAGAGGACAGAAATAAGGTTCCAAAA
AGGACAGGCTGTTCTATGTTCCCAAGACAACAGTGAATGCACCCCAACTT
TTAGCAAGATGAATATAGGTATTTATATATTAGATCTGTTTGCCTAGTTT
ATTTTATGCCCTACAGCCTGTCTGACATCACATTAGTTACCTTGCTGTTT
ATATGACAAGAAAACTCACAAAACTAATTTAAGGAAAGCAATTATTTTGG
TTTACATCTTAGGGTACAGTCCATCATGACAGAGCATGCTTGCTGGTCAC
ACCACCCCTACCCTTGGGAAGCACAGAGAGATGAATGTTGGTGCTCACTT
TCACAGTTTGGTTTAGACCTCAAACCTTCAGAATGATGCCCGCATTGAGG
ATCAGTGTTCCCATTTCTATTCTCTAACTATTACATCATTATGCGCGTAC
ATATCTTCTTACACATACACCTACCTACGCATATATGCATACAGACTTGC
ATCTATGCGAGCTTGCTTTGCGCATACTTATGTTCTGTCTGCGTGCCATG
CGGTTGACCGAAAATTTCGTACAATCTGTTACTGAATCCTCGGTCGTTTG
TGTGCCCCGCCTCTTTCCTTTACCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_k02.g1 MSMg01no089_k02.g1 CHROMAT_FILE:
MSMg01no089_k02.g1 PHD_FILE: MSMg01no089_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:30 2005
         (289 letters)



>mm_chr1_131096191_131096880
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggaagtt-aaaattaataaagaggacagaaataaggttccaaaaaggacaggctgtt 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatggaagtttaaaattaataaagaggacagaaataaggttccaaaaaggacaggctgtt 260

                                                                       
Query: 60  ctatgttcccaagacaacagtgaatgcaccccaacttttagcaagatgaatataggtatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatgttcccaagacaacagtgaatgcaccccaacttttagcaagatgaatataggtatt 320

                                                                       
Query: 120 tatatattagatctgtttgcctagtttattttatgccctacagcctgtctgacatcacat 179
           ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 321 tatatattagatcagtttgcctaatttattttatgccctacagcctgtctgaaatcacat 380

                                                                       
Query: 180 tagttaccttgctgtttatatgacaagaaaactcacaaaactaatttaaggaaagcaatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttaccttgctgtttatatgacaagaaaactcacaaaactaatttaaggaaagcaatt 440

                                                         
Query: 240 attttggtttacatcttagggtacagtccatcatgacagagcatgc 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttggtttacatcttagggtacagtccatcatgacagagcatgc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)