BAC Information

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BAC

Clone NameMSMg01-089K04
Chromosome1 (Build37)
Map Location 78,698,277 - 78,698,569
singlet/doubletsinglet
Overlap geneAcsl3
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Utp14b
Downstream geneLOC620521, Kcne4, LOC100039260, EG545332, Scg2, Ap1s3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089K04.T7 (MSMg01no089_k04.b1)MSMg01-089K04.TJ (MSMg01no089_k04.g1)
ACCAG308083AG308084
length727705
length of high quality
(start - end)
321 (44 - 364)298 (74 - 371)
definitionCHROMAT_FILE: MSMg01no089_k04.b1 PHD_FILE: MSMg01no089_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005CHROMAT_FILE: MSMg01no089_k04.g1 PHD_FILE: MSMg01no089_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACAGAGGAATGGCCAGAAGCACTTAAAGAAATGTTCGAAGTCCT
TAGTCATCAGAGAAATGCCAATCAAAACGACCCTGAGATTCCCATCTTAC
ACCCATCAGAATGGTTAAGACCGGCAGTGGTAGTGCACACCTTTTATCCC
AGCTCTTGGGAGGCAGAGGCAGATGGATTTCTGAGTTCGAAGCCAACCTG
GTCTACAGAGTTTCAGGACAGCCAGGGCTAAACAGAGAAACCCTGTATCG
AAAAACCAAAAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGATGGTAGGACCGCCCCCCGCAAGGATAGAAAGAATGAAA
GATCGACCGACCGATTGACCCCATCCAAATAAAGACTGTTTTACCGACCG
TTTGCCCTACTGCCTTATTCACCGAGACCGCCTGTATTGCCCGCCCTGCT
CCACCCCCTCTTCTTTCGTTCCTCTCCCTCTTCTTCCTCCTTTCTTCCTC
TCCCTTTTTCTTTCTTCTATCCCCCCCCCTTCCCTTACCCCCTTCCATTC
TTTCTTTCCCCCTTCATCACATTTTTCTTCTCCCTTTTTTTTTTCCCTCC
CTTCTTTCCCTTTCTCTCGCTCCTTTCTTCCTTTTTTCCCCCCCTTGCTA
TTCCTTTTCCCTCATCCCCCAACCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTGAAAGTGTTTTCCCAGATGAC
TTTACAAAGTGGTGCCTGTGTTTACAGAGACTGTTTTTACTAGTTGAAAG
AGCTTATCTCTGTAATATTGAGGGGGGCTTTTATATCATTTCTGAAATAT
AACATTTTAAAGAGAGACTAAAGTATTCTTAAAGCTTGGCATGTTATGAA
TACGGTTGCAAAAGCTGTTCAGCCACAGATTTGTGGTCATTAGTCACTCT
CTACTGTTGGTGTAGGGAATGCTTGTTTTTGTTAGCTGCCTGGCTAGGTT
ATTGTGCAGTGTTTGTGGCCTGACCTTACCCCTGGCTTTGCCCAGGAAAA
CCAAGGAAAGCCTGGCAAGCCAAGTACTGTGACCTACAAGGCAAAACACC
TTTCGTGCTTCTGCTGCAGTTTGTTCAGCTTCAGTAGTGCCAGATGCATG
CTGGGGTTATTCGGGGCTTCCTGGGAGACACAAGTAAGCATCTGCTTACC
CCACATAGGGGACAGATGACAGACTAAATGCTGGCGTCACCAGCGTCCAA
CTTGGTGAACTAGTGAGTGTCACTGGAGTTCCTTATGGAGTGCAGGTGAG
CAGGAATGACTAGAGACAGATGCAGCAGCAGCAAAAGTCCACCCCTGCAT
GGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_k04.g1 MSMg01no089_k04.g1 CHROMAT_FILE:
MSMg01no089_k04.g1 PHD_FILE: MSMg01no089_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:30 2005
         (298 letters)



>mm_chr1_78698077_78698772
          Length = 696

 Score =  540 bits (279), Expect = e-158
 Identities = 291/295 (98%), Gaps = 2/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttgaaagtgttttcccagatgactttacaaagtggtgcctgtgtttacagagactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttgaaagtgttttcccagatgactttacaaagtggtgcctgtgtttacagagactg 260

                                                                       
Query: 61  tttttactagttgaaagagcttatctctgtaatattgaggggggcttttatatcatttct 120
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttt-actagt-gaaagagcttatctctgtaatattgaggggggcttttatatcatttct 318

                                                                       
Query: 121 gaaatataacattttaaagagagactaaagtattcttaaagcttggcatgttatgaatac 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 319 gaaatataacattttaaagagagactaaagtgttcttaaagcttggcatgttatgaatac 378

                                                                       
Query: 181 ggttgcaaaagctgttcagccacagatttgtggtcattagtcactctctactgttggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggttgcaaaagctgttcagccacagatttgtggtcattagtcactctctactgttggtgt 438

                                                                  
Query: 241 agggaatgcttgtttttgttagctgcctggctaggttattgtgcagtgtttgtgg 295
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 agggaatgcttgtttttgttagctgcctggctaggttattgtgcagtgcttgtgg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 696
Length adjustment: 9
Effective length of query: 289
Effective length of database: 687
Effective search space:   198543
Effective search space used:   198543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)