Query= MSMg01no089_k12.b1 MSMg01no089_k12.b1 CHROMAT_FILE:
MSMg01no089_k12.b1 PHD_FILE: MSMg01no089_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:32 2005
(200 letters)
>mm_chr1_169309020_169309620
Length = 601
Score = 350 bits (181), Expect = e-101
Identities = 196/201 (97%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 1 gtggcagtaggagagaagagacgcctacaaattgtcctgtcccctccatgtgcacatggc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtggcagtaggagagaagagactcctacaaattgtcctgtcccctccatgtgcacatggc 279
Query: 61 tgtacgtgcatgggtgtgtgtacacacaaaaataaataataaagaagtaaggaagt-aaa 119
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 278 tgtacatgcatgggtgtgtgtacacacaaaaataaataataaagaagtaaggaagtaaaa 219
Query: 120 atctgttctcaaaactgaaaggaagagatggaggaaggaagcgaggtgaagaaaggaagg 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 218 atctgttctcaaaactgaaaggaagagatggaggaagaaagcgaggtgaagaaaggaagg 159
Query: 180 aagagggaaggaaggaaggat 200
||||||||||||||| |||||
Sbjct: 158 aagagggaaggaagggaggat 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 601
Length adjustment: 8
Effective length of query: 192
Effective length of database: 593
Effective search space: 113856
Effective search space used: 113856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no089_k12.g1 MSMg01no089_k12.g1 CHROMAT_FILE:
MSMg01no089_k12.g1 PHD_FILE: MSMg01no089_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:32 2005
(284 letters)
>mm_chr1_169192222_169192909
Length = 688
Score = 511 bits (264), Expect = e-149
Identities = 281/288 (97%), Gaps = 4/288 (1%)
Strand = Plus / Plus
Query: 1 cttgctcctctgcccccgatggacctggtcatttagggtcaaactatttttagtgttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgctcctctgcccccgatggacctggtcatttagggtcaaactatttttagtgttggg 260
Query: 61 catggctccctcacaggaatccaatttggctttcttctccccagctctgctgccccactg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 catggctccctcacaggaatccaatttggctttcttctccccagctccgctgccccactg 320
Query: 121 ccctgctctgccttgccttacccctaacatctcaccccgagagtagttgggggtatttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgctctgccttgccttacccctaacatctcaccccgagagtagttgggggtatttgg 380
Query: 181 tacacaacagatcccttcaggattgaattacataaaaccctcttcccaa-c---cctggg 236
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 381 tacacaacagatcccttcaggattgaattacataaaaccctcttcccaaacaaacctggg 440
Query: 237 acccacaattcttccacacgctgtaatgatagagctctggcctctagt 284
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 acccacaattcaaccacacgctgtaatgatagagctctggcctctagt 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 688
Length adjustment: 9
Effective length of query: 275
Effective length of database: 679
Effective search space: 186725
Effective search space used: 186725
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
