BAC Information

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BAC

Clone NameMSMg01-089O21
Chromosome1 (Build37)
Map Location 60,894,789 - 60,895,318
singlet/doubletsinglet
Overlap genenone
Upstream geneBmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555
Downstream geneRpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089O21.T7 (MSMg01no089_o21.b1)MSMg01-089O21.TJ (MSMg01no089_o21.g1)
ACCAG308296AG308297
length691692
length of high quality
(start - end)
425 (46 - 470)536 (72 - 607)
definitionCHROMAT_FILE: MSMg01no089_o21.b1 PHD_FILE: MSMg01no089_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:55 2005CHROMAT_FILE: MSMg01no089_o21.g1 PHD_FILE: MSMg01no089_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGCCCTACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACAGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTACCACAGCCAGAAGCTGTAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAACATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCCAA
TGGATGTATCTGTAGCCCATCATCCTGAGTGAGCCATCACATTCACAAAT
ACACTTATATCACATGTACTCACTGATACGCGGATATTAGCCCCAAACCT
AGTACACCCCCGATACTCCATATAATTTGCCCCCCTCATGN
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAATTAAATTAATGAAGTAAATGAAGGGT
AGATTGGACTGTTCTAGACTTGACCTAGTAATTAATGATTTCACTCTCAC
CATAATAATAATTGAGTTTGCCCTCTTATTATTGCTACATACCAAACCAG
TATTTCCCTGAGTGTGGATCTAACCACTCATAATTTTAATCTAACCACAC
ATAATTTTCTTGTCTGCAAATTATGCTTCTTAATGTAGAGACCTTTGACC
CAGCTGTAGCTATTATGTTTGTCTGCCCCTTTCTACTACTTATAAGTTCT
TTGAACTTGAAATGAACTTTGAGTTTCAAGCTTATTGTTTCCATGTTTTT
CATTATGAAAATGACATGAGCCTAGAACATTTTATGGAACCAAAAATAAT
AGTAATAACTCTTCATAGATATACATGATATCTCTTTTGAGAAACAGCCT
TAGTGAGTGCCCAGAGACACGATATTTCCTAGCTGTGTTTTCTCGACACG
TTGATCCATTGCAGGCATTACTACATCTATGATTCTGTTGCTCTTATCCT
ATGGTCTTGAAAAGGATTTGAGTCCCCTGTAGTCTCTTTCTCCCGAACTT
TGAAGTGCAAGGTCTAACTGGCTTACTCCATCCTTACTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_o21.g1 MSMg01no089_o21.g1 CHROMAT_FILE:
MSMg01no089_o21.g1 PHD_FILE: MSMg01no089_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:55 2005
         (536 letters)



>mm_chr1_60894589_60895518
          Length = 930

 Score =  953 bits (493), Expect = 0.0
 Identities = 523/537 (97%), Gaps = 8/537 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taattaaattaatgaagtaaatgaagggtagattggactgttctagacttgacctagtaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 730 taattaaattaatgaagtaaatgaagggtaggttggactgttctagacttgacctagtaa 671

                                                                       
Query: 61  ttaatgatttcactctcaccataataataattgagtttgccctcttattattgctacata 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 670 ttaatgatttcactctcaccataataataattgagtttgccctctcattattgctacata 611

                                                                       
Query: 121 ccaaaccagtatttccctgagtgtggatctaaccactcataatttta-atctaaccacac 179
           ||||||||||||||||||||||||||||||||||||||||||||||| |       ||||
Sbjct: 610 ccaaaccagtatttccctgagtgtggatctaaccactcataattttaga-------acac 558

                                                                       
Query: 180 ataattttcttgtctgcaaattatgcttcttaatgtagagacctttgacccagctgtagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 557 ataattttcttgtctgcaaattatgcttcttaatgtagagacctttgacccagctatagc 498

                                                                       
Query: 240 tattatgtttgtctgcccctttctactacttataagttctttgaacttgaaatgaacttt 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 tattatgtttgtctgcccctttctactatttataagttctttgaacttgaaatgaacttt 438

                                                                       
Query: 300 gagtttcaagcttattgtttccatgtttttcattatgaaaatgacatgagcctagaacat 359
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 437 gactttcaagcttattgtttccatgtttttcattatgaaaatgatatgagcctagaacat 378

                                                                       
Query: 360 tttatggaaccaaaaataatagtaataactcttcatagatatacatgatatctcttttga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttatggaaccaaaaataatagtaataactcttcatagatatacatgatatctcttttga 318

                                                                       
Query: 420 gaaacagccttagtgagtgcccagagacacgatatttcctagctgtgttttctcgacacg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaacagccttagtgagtgcccagagacacgatatttcctagctgtgttttctcgacacg 258

                                                                    
Query: 480 ttgatccattgcaggcattactacatctatgattctgttgctcttatcctatggtct 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgatccattgcaggcattactacatctatgattctgttgctcttatcctatggtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 930
Length adjustment: 10
Effective length of query: 526
Effective length of database: 920
Effective search space:   483920
Effective search space used:   483920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)