BAC Information

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BAC

Clone NameMSMg01-089P11
Chromosome1 (Build37)
Map Location 133,371,952 - 133,372,433
singlet/doubletsinglet
Overlap geneSrgap2
Upstream geneZp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, LOC100042826, LOC100042821
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089P11.T7 (MSMg01no089_p11.b1)MSMg01-089P11.TJ (MSMg01no089_p11.g1)
ACCAG308322AG308323
length704692
length of high quality
(start - end)
290 (58 - 347)491 (73 - 563)
definitionCHROMAT_FILE: MSMg01no089_p11.b1 PHD_FILE: MSMg01no089_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:58 2005CHROMAT_FILE: MSMg01no089_p11.g1 PHD_FILE: MSMg01no089_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTC
TTTACTTTTTCTGTCTCTATGACCATGACTTTGGCCCAAGGCTCCAGAAG
TGCTAGTTCCTCATGGCAGGGAGAACGTGGTGAAGCAGATCACTCACACC
ATGGCAGCCAGGAAGCAGCGAGAGAATGTCTGCCTTCCTAGACCTTCTCC
TCTGACTCCAGGCAGGCTCCCAGCTTATGAGAGGAGAGCATCCCCTTCAC
TGGGAGAAATTCCTCCCTGCTTAGTCTTCTCTGGAAATGCTCTCACAGAC
ATACTCTGAGGTATTCTTGACCAGGTCTCTAGGTGCTTCCAAGCTAATCT
AGTTGACCAGACTAATTATCACAGGGACCAAACATTCCCATTGGTATTTC
AGGCACCAGCAGCTAGCCAGGAAGAATTCTGGAGCCCCGACCCTCAATGT
CAGCAAGTAGTGGTGAACAGTTTGGGCCAGCAAATGACTTAGGCTCCTCC
ATTTCAGGGCCTTATTTCCCCTCTGGACTTGACCCTCCCTCCCTGTGGCA
GAGCCTGTGTGTATGCTGTTACAACGCCAGGCAAGCACCCTCTTGGAGTG
CTCACTTCCAGATGACTGCCCTGGACATGCAGTGCTGACAGAGGACCCTG
CTCTCTTCCCTTATGTTTTCTACCTGGTATTCTTCAAAGGACCTTGTCTT
ATTC
ATTGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTCTTTAAGACTGTTTGAGATGTCCT
ATTGGAAGGAGATGGGAGGGACAAGAGAGGAAGAGCAGTTAGGAGGCTAC
TGACACAGTGCAGTACAAGGTGATAGATAGTTCTGGGCCACAGCAGCAGC
AGTGAGGAATGGTGAGTCAGGCTTTGCAGCATCTGCTCAAGTACAAGACA
GTGAGTGCCACACAGAACCTAAGAAAACTCTACAACAGAATCCAAAGCCT
CTAAAGAACACCAGATTCAAACATCTGCTATGAGATCCAAGGATGAGGAA
ATTAGCTGTGTCTGTCACCCAGTGTCCAACATGGTTCCTGGCACAGAAAA
TGCTATCCAGACAGCGCCAAATGAATAAAGATCAAATGGAATATATCATA
AATCCAAAAGCTCTATAGTCATCAGCAGACTAGAGAATATAAAGCATTAA
ATCATACTTCACTGACTAGTGATCAGTGAAGCCACCATTAAGTGGCCAGT
GATCCTCTCCTGTAGGTGAATGAATCTTTTTTTTGTAAAGATTCTCCATT
GTAATTTGCTTCATCATATTAAATATTTAAACCTCCCGAAAATGTCATAA
TATATAGCTTGAGAATCTAAACAACTCCAGCTACTTCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_p11.g1 MSMg01no089_p11.g1 CHROMAT_FILE:
MSMg01no089_p11.g1 PHD_FILE: MSMg01no089_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:58 2005
         (491 letters)



>mm_chr1_133371744_133372633
          Length = 890

 Score =  845 bits (437), Expect = 0.0
 Identities = 474/491 (96%), Gaps = 9/491 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattctttaagactgtttgagatgtcctattggaaggagatgggagggacaagagaggaa 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 209 cattctttaagactgtttgagatgtcctattaaaaggagatgggagggacaagagaggaa 268

                                                                       
Query: 61  gagcagttaggaggctactgacacagtgcagtacaaggtgatagatagttctgggccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagcagttaggaggctactgacacagtgcagtacaaggtgatagatagttctgggccaca 328

                                                                       
Query: 121 gcagcagcagtgaggaatggtgagtcaggctttgcagcatctgctcaagtacaagacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcagcagcagtgaggaatggtgagtcaggctttgcagcatctgctcaagtacaagacagt 388

                                                                       
Query: 181 gagtgccacacagaacctaagaaaactctacaacagaatccaaagcctctaaagaacacc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 389 gagtgccacacagaacctaagaaaactctacaacagaatccaaagcctctaaaga----- 443

                                                                       
Query: 241 agattcaaacatctgctatgagatccaaggatgaggaaattagctgtgtctgtcacccag 300
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ---ttcaaacatctgctatgagatccaaggatgaggaaattagctgtgtctgtcacccag 500

                                                                       
Query: 301 tgtccaacatggttcctggcacagaaaatgctatccagacagcgccaaatgaataaagat 360
           ||||||||||||| |||||||||||||||| ||||||||||| |  ||||||||||||||
Sbjct: 501 tgtccaacatggtacctggcacagaaaatggtatccagacagtgttaaatgaataaagat 560

                                                                       
Query: 361 caaatggaatatatcataaatccaaaagctctatagtcatcagcagactagagaatataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatggaatatatcataaatccaaaagctctatagtcatcagcagactagagaatataa 620

                                                                       
Query: 421 agcattaaatcatacttcactgactagtgatcagtgaagccaccattaagtggccagtga 480
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 621 agcattaaatcatacttcactgactagtgatcagtgaaaccaccatta-gtggccagtga 679

                      
Query: 481 tcctctcctgt 491
           |||||||||||
Sbjct: 680 tcctctcctgt 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)