BAC Information

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BAC

Clone NameMSMg01-089P23
Chromosome1 (Build37)
Map Location 174,058,221 - 174,209,243
singlet/doubletdoublet
Overlap genePex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2
Upstream geneSdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa
Downstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089P23.T7 (MSMg01no089_p23.b1)MSMg01-089P23.TJ (MSMg01no089_p23.g1)
ACCAG308346AG308347
length767674
length of high quality
(start - end)
230 (181 - 410)331 (121 - 451)
definitionCHROMAT_FILE: MSMg01no089_p23.b1 PHD_FILE: MSMg01no089_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:00 2005CHROMAT_FILE: MSMg01no089_p23.g1 PHD_FILE: MSMg01no089_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,209,014 - 174,209,243)(174,058,221 - 174,058,551)
sequence
TTTTTTTTTTTTNTTTNNCTTTTCCNTTTCCCCNNNCTTTTTTGAAGGTN
NNNTTACTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTCTTCTTCCACTCTAGTACTGGGGATTGAACCCAAAACTC
ACTCGTGTTAGGCAAGCACTTCACCCATAAGCTATGTCCCTAGTGATGAC
AGGAGCTTATATACCAATGTGCTGAATTCTGTTGGTGCTTCACTGAGCAG
TTTCACAGACCTCTTCAGATACCTTCTCCCTGTGTCCTGTGTGTACAGGT
TCCTGCTATCTCATTAGCATACGAAGCAGCTGAGAGTGACATCATGAAGA
GGCAGCCACGAAACTCCCAGACAGATAAGCTGGTGAACGAGAGGCTTATC
AGCATGGCTTACGTACTGATTGGCGCGCCCAGCCAGGGCTTGGGAGGGTA
TCCCCTAAAGGTTGCTTCTAGTTCCCGAGAGAGATGAGTGACGGGTCAGG
AAAGAGTCCAGCTGCCGGAGAGCCAGAGACTTCCATCTCTGTCTCCAAGG
GATGGCCCTTTCCCTCCCCTTTCTCTACTCAAGTCCCACCTTTTGCTTAC
AACTGCTTTCAGGCATGATCCAGGCTCTGGGTGGCTTCTTTACCTACTTT
GTGATACTGGCAGATAATGGGTTTCTACCATCGCGGCTGTTTAGGATCCG
ACTGGACTGGGATGATCGGACTACCAACGACCTGTAAGACAGCTATGGAC
AAAATTGTGTGAATTGC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGAAATTCCAGAAATAAGGCTCTCTCTCCCCTCTTCTTCA
TGTTAGATGAAATGTGCCCGTTTTTGTTTGTTTGTTTGGTTGGTTTGGTT
TTTCAAGGCAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTC
TGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCT
GAGTGCTGGGATTAAAGGCGTGCGCCACCACGACCCAGCAGGGTTTTTTT
TTTTTTTTAAGGGAATTTTATAGTGTGCATATAGAGATTTCTTTGCACAG
CTTTTATTTATTTCTCTCCTCCTAATTCTGAGATGAACACTGGTTCTGTG
TAAAAGGGTTTCCTTCCCAACTGGTCACAACAAACTAGATGGTTCTCAAG
GAAGGTGGGAAGCCTATTGGCCAGTATTCCAGGCAGAATAGACCCCAGAA
AAAGAGAGAGAACTCCAGGAAAGTCAGCACTTTGTATCATTATTTTCCTA
AGAGTTTGTTTCATATCACACGGGCTGTCTAGCCCTTTTCCCCTTCAACA
TTCCCCACCACGACCGTCCTCTTGTTCCCGAAGGCTGCTCTTGATGATTT
CTCTTGCCCTCCAAGGTGCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_p23.b1 MSMg01no089_p23.b1 CHROMAT_FILE:
MSMg01no089_p23.b1 PHD_FILE: MSMg01no089_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:00 2005
         (230 letters)



>mm_chr1_174208814_174209443
          Length = 630

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctatgtccctagtgatgacaggagcttatataccaatgtgctgaattctgttggtgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gctatgtccctagtgatgacaggagcttatataccaatgtgctgaattctgttggtgctt 371

                                                                       
Query: 61  cactgagcagtttcacagacctcttcagataccttctccctgtgtcctgtgtgtacaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cactgagcagtttcacagacctcttcagataccttctccctgtgtcctgtgtgtacaggt 311

                                                                       
Query: 121 tcctgctatctcattagcatacgaagcagctgagagtgacatcatgaagaggcagccacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcctgctatctcattagcatacgaagcagctgagagtgacatcatgaagaggcagccacg 251

                                                             
Query: 181 aaactcccagacagataagctggtgaacgagaggcttatcagcatggctt 230
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 aaactcccagacagacaagctggtgaacgagaggcttatcagcatggctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no089_p23.g1 MSMg01no089_p23.g1 CHROMAT_FILE:
MSMg01no089_p23.g1 PHD_FILE: MSMg01no089_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:00 2005
         (331 letters)



>mm_chr1_174058021_174058751
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttgtttgtttgtttggttggtttggtttttcaaggcagggtttctctgtgtagcctt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttgtttgtttggttggttggtttggtttttcaaggcagggtttctctgtgtagcctt 260

                                                                       
Query: 61  ggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc 320

                                                                       
Query: 121 tctgcctcctgagtgctgggattaaaggcgtgcgccaccacgacccagcagggttttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcctcctgagtgctgggattaaaggcgtgcgccaccacgacccagcagggttttttt 380

                                                                       
Query: 181 ttttttttaagggaattttatagtgtgcatatagagatttctttgcacagcttttattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttttaagggaattttatagtgtgcatatagagatttctttgcacagcttttattta 440

                                                                       
Query: 241 tttctctcctcctaattctgagatgaacactggttctgtgtaaaagggtttccttcccaa 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctctcctcctaattctgagatgaacactggttctgtgtaaaagggtttccttcccaa 500

                                          
Query: 301 ctggtcacaacaaactagatggttctcaagg 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 ctggtcacaacaaactagatggttctcaagg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)