BAC Information

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BAC

Clone NameMSMg01-090A08
Chromosome1 (Build37)
Map Location 30,188,198 - 30,188,499
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090A08.T7 (MSMg01no090_a08.b1)MSMg01-090A08.TJ (MSMg01no090_a08.g1)
ACCAG308364AG308365
length734759
length of high quality
(start - end)
315 (39 - 353)115 (71 - 185)
definitionCHROMAT_FILE: MSMg01no090_a08.b1 PHD_FILE: MSMg01no090_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:02 2005CHROMAT_FILE: MSMg01no090_a08.g1 PHD_FILE: MSMg01no090_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TCTCTCTCTCGAGTGATTAGTTGCATGTTGTTCTGTGTCTAGAGATAGGC
TGGATGAGGTTTCCTCCTTTCACAATATCTTGTCTACTGATGCTTTCTCT
GTTCAGGTTGTCTGTGGGATGCCATATTGTTGAGATTCATGAATGGAGCT
TCCTGATCACCTAGAGGCTGAATCACACAACAGATTTCCTGATCTGCTGC
TTGCTTGCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTCTCTC
TCTTCCTTTTCTTTCTTTCTTTCTTTCCATCTTTCTTTCTTTCCTTCTTT
CTTTCTTTCTTTCTCTCGCTTCCTTCATTCTTTCTCTCTCTCTTCCTTTC
TTTCTTTTCTTTCCTTTCCTCCGTTCTATCCTTTTTTGTTTTACGATTTA
ATATTATTTTTTTTTTTCATATGATCTCAATTACCTCCACCTCTGTTTTT
TATTCTTGGTCTCTAACCTATCATATTATCTTACTTTTAATTAATATTAT
TATTTATTTATTGATTATCTCCTTCTAGTGTATCTGTTTCTCTCTTTGTC
ATTTTTTTTGTTTATTATCAGTGTATTTTTGCTTTTTTCTTTTATCTCTC
TAACTATCTTTTTTATTGTTTGTTTTATTTCTGG
GAAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCATCTGAGGAATACCAAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGACTCCACCTCACACCAGTCAGAATGGGTAAGATGAAAA
ATTCTGGTGTATAGGGTTATGGTGAGCGAGGATGTGTGAGAAAGAGGAAC
ACGTCCCCCATTGGTTGGGGGGGAATGCAAGGCTTGTACTATCTGCTCTA
GAATATCAGGCGCGGGGGGTTCCTCAAGAATATTTGTTTATATTAACTTC
CGGGTGGATGCCGCGAGAACGTCACAGTGTTTTTTTGTCCCCCCCACCAT
CCCGCCCCAGCAGTGGAAAATGAACAGCGGCGTGCTTGGATGGGGTGGCT
GAGGCTGATAAAGAAAGAGTTCCTGGAAGGGTGGAAGAAAACACCACAAA
AATCAAAAAGAAAAAAAAAAAAATATGGAGCAGAAAAAAGGTTAATACTA
GTTTACGAAAGTCCAAAAAAAAAAAAGAACACAAAAAAAAAAACAAAACA
ATAGAAATAAGAAAAAGAAAAAAACAAGACAGACAAAACAAACAAAAAAG
ATAAAAACAAATAAAAACAAACAAAAAAAAAAAAAAAAAAAACAAAGCAA
AACACAAAACAAATAATACAAAGAGAACGAACAGAAAAGACAAAAAAAAG
AAGAAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_a08.b1 MSMg01no090_a08.b1 CHROMAT_FILE:
MSMg01no090_a08.b1 PHD_FILE: MSMg01no090_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:02 2005
         (315 letters)



>mm_chr1_30187995_30188709
          Length = 715

 Score =  536 bits (277), Expect = e-157
 Identities = 300/313 (95%), Gaps = 12/313 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctctctct-cgagtgattagttgcatgttgttctgtgtctagagataggc 62
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctctctctgc-agtgattagttgcatgttgttctgtgtctagagataggc 262

                                                                       
Query: 63  tggatgaggtttcctcctttcacaatatcttgtctactgatgctttctctgttcaggttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggatgaggtttcctcctttcacaatatcttgtctactgatgctttctctgttcaggttg 322

                                                                       
Query: 123 tctgtgggatgccatattgttgagattcatgaatggagcttcctgatcacctagaggctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctgtgggatgccatattgttgagattcatgaatggagcttcctgatcacctagaggctg 382

                                                                       
Query: 183 aatcacacaacagatttcctgatctgctgcttgcttgctttctttctttctttctttctt 242
           ||||||||||||||||||||||||||||||||        ||||||||||||||||||||
Sbjct: 383 aatcacacaacagatttcctgatctgctgctt--------tctttctttctttctttctt 434

                                                                       
Query: 243 tctttctttctttctttctttctttctttctttctttctttctttctctttctttctttc 302
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 435 tctttctttctttctttctttctttctttctttctttctttctttct--ttctttctttc 492

                        
Query: 303 tttctctctctct 315
           | |||||||||||
Sbjct: 493 tctctctctctct 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)