Query= MSMg01no090_c23.b1 MSMg01no090_c23.b1 CHROMAT_FILE:
MSMg01no090_c23.b1 PHD_FILE: MSMg01no090_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:16 2005
(320 letters)
>mm_chr1_69808310_69809029
Length = 720
Score = 557 bits (288), Expect = e-163
Identities = 304/314 (96%), Gaps = 8/314 (2%)
Strand = Plus / Minus
Query: 5 gaattcagtgcctcctttaatctctcataggagaaatgtcctacatacaccgaacggcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaattcagtgcctcctttaatctctcataggagaaatgtcctacatacaccgaacggcca 388
Query: 65 gctagttaagattatttttagtaatgcttttgtagacgatcagtggtttcgatcaaaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctagttaagattatttttagtaatgcttttgtagacgatcagtggtttcgatcaaaact 328
Query: 125 cttcaagattacttacattaacttgagcactttctgaccattattttcgtgagtttaata 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 327 cttcaagattacttacattaacttcagcactttctgaccattattttcgtgagtttaata 268
Query: 185 tttagtaaatttaaatatacctcttttaacagtttgtgcttctaggatgtagctgtttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttagtaaatttaaatatacctcttttaacagtttgtgcttctaggatgtagctgtttca 208
Query: 245 agtacacacacacacacacaaacacacacacttgtgtcacatacacacatctcatgaaca 304
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 207 agtacacacacatacacaca--------cacttgtgtcacatacacacatctcatgaaca 156
Query: 305 ctcatatgtgcatc 318
||||||||||||||
Sbjct: 155 ctcatatgtgcatc 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_c23.g1 MSMg01no090_c23.g1 CHROMAT_FILE:
MSMg01no090_c23.g1 PHD_FILE: MSMg01no090_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:16 2005
(284 letters)
>mm_chr1_69710593_69711276
Length = 684
Score = 513 bits (265), Expect = e-150
Identities = 277/281 (98%)
Strand = Plus / Plus
Query: 4 tcactgaagggacaagagagcaagccaactaatccacgagaccatgtttattatctactg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcactgaagggacaagagagcaagccaactaatccacgagaccatgtttattatctactg 263
Query: 64 tattgaggctaccacagtaaacaagactgataatggtcctcaagtaagtactgggaggaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 tattgaggctaccacagtaaacaagactgataatggtcctcaagtaagtactgggagaaa 323
Query: 124 aaaaaagacatatattcaattatttcagacagtgtgaagtgaatcaaattggtaaatatt 183
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 aaaaaagacataaattcaattatttcagacagtgtgaagtgaatcaaattgggaaatatt 383
Query: 184 aacaaatatataggaagggcttatattactactgagcttcagtcaagaggcaactaaaga 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacaaatatctaggaagggcttatattactactgagcttcagtcaagaggcaactaaaga 443
Query: 244 aatgagttaacaaagaaagacatcttcagtgaagtcacagc 284
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatgagttaacaaagaaagacatcttcagtgaagtcacagc 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
