BAC Information

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BAC

Clone NameMSMg01-090M22
Chromosome1 (Build37)
Map Location 73,638,726 - 73,795,825
singlet/doubletdoublet
Overlap genenone
Upstream geneSmarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090M22.T7 (MSMg01no090_m22.b1)MSMg01-090M22.TJ (MSMg01no090_m22.g1)
ACCAG308933AG308934
length718721
length of high quality
(start - end)
289 (69 - 357)229 (131 - 359)
definitionCHROMAT_FILE: MSMg01no090_m22.b1 PHD_FILE: MSMg01no090_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:05 2005CHROMAT_FILE: MSMg01no090_m22.g1 PHD_FILE: MSMg01no090_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,795,538 - 73,795,825)(73,638,726 - 73,638,954)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCG
AGTCCTCTCGTGCTTTGACTGTATAAGCCACATAAAACTGTCGGAGGCTG
CAGAATGTGCACAGATGTTGAAACAAGCGCAAGTAATTAGAAGATGAAAG
TAAGTTAAGATTCCTCCAGGATGAAATGGGAAAAGAGTTTCCTCTCCCTG
CTATCCCCAGGGCTGTTGAAGTAGCTAAGTAAAATATCAAAGACACATAG
CTTTTCCATTTTGGTTTTTCAAAATAGTAGGCTAGGGAAATTTTAATTAA
ATATTCACAGGTCTAACTTTCTGCCCACCTTTTATTCCTCTGAGTTTTGA
CCTTTGTTATCAGGTCTGACCTCTTTCTAGGCATGTGACAGTGAAGGCAA
AGAAGGCAAGATCATGGAAACCTGTGATCTCAGCACTCAGGTGGAGCTCT
GGGAATTCAAGGCCAGTATGATCTACAAAGTGAGTTTCAAGCCAGCCAGG
GCTATCTAGTAAGACTCAGTCTCAAACCAACCAACCAACCAACAAACCTT
GCAAGCAAGCAACCAACCAAACAAGCCCCCCTCCACAAAGGTAGATGTAT
CCACTTTAGTTAATGCAGCTCAAATCCTCTGTAGGCATACCTAGAGGACT
ATTTTGCTCATGATTGTGGTTGCCCCAGTTAATAATCATCTCTGCGTGTT
TTTATTTCTTTTTCAGTA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGTTCTCTGTCTGAGTTTGGTTAAT
AAAGTCTGGTTATCCCAGAAACAAGAGAAGAAGTGACGTTTACACCACGT
CTGTGAGCAGACACTGAAAAAGTGTTACATAAAGATGTCTCCTGCTTAAA
TGAGACCCTTTGAGTAGTAATGGATCAATCTCCTAGCAAGAACCTGCTGC
TTTCAGAGTCAGAAATAGGCAGGTTACTGACCCCAGAAGTCAACATGCAT
TTACACACCGAATTCAAGGCAGAGAATTCTCTAGACAGTGAGCCCAGTCT
GGTGACTTTCTTTTTTCTACGCACGCCCCCACAAAATGGCAGAGCCAGAT
CAAGGTCTGTAATGTATAAACACTGGATATAGAATATTGGAAGGGGTCTA
GACCTAGCTACTGGTATGCTTAAATGGGCTACAGAGGCAGTAAGGTAGCA
GTATTCAAGGTCTTTCATGAGAAACTTAAGTGTAGTCTGTCCTGTCTTTC
TAGGCTCATTTTCCTACTTGCCACCCTAAGTTTAATAACGAAAAGTAACT
GATATAGTCACTTAATAACTTATGTTATCTCTCATTTCATTTGGATCTTC
TTTATTTCTCTGCTATTTTATATTATTATTTACCTATATTTGCTGAGATC
GTGCATATTTATTAAGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_m22.b1 MSMg01no090_m22.b1 CHROMAT_FILE:
MSMg01no090_m22.b1 PHD_FILE: MSMg01no090_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:05 2005
         (289 letters)



>mm_chr1_73795338_73796026
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtataagccacataaaactgtcggaggctgcagaatgtgcacagatgttgaaacaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctgtataagccacataaaactgtcggaggctgcagaatgtgcacagatgttgaaacaagc 429

                                                                       
Query: 61  gcaagtaattagaagatgaaagtaagttaagattcctccaggatgaaatgggaaaagagt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acaagtaattagaagatgaaagtaagttaagattcctccaggatgaaatgggaaaagagt 369

                                                                       
Query: 121 ttcctctccctgctatccccagggctgttgaagtagctaagtaaaatatcaaagacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcctctccctgctatccccagggctgttgaagtagctaagtaaaatatcaaagacacat 309

                                                                       
Query: 181 agcttttccattttggtttttcaaaatagtaggctagggaaattttaattaaatattcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcttttccattttggtttttcaaaatagtaggctagggaaattttaattaaatattcac 249

                                                           
Query: 241 aggtctaactttctgcccaccttttattcctctgagttttgacctttg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggtctaactttctgcccaccttttattcctctgagttttgacctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no090_m22.g1 MSMg01no090_m22.g1 CHROMAT_FILE:
MSMg01no090_m22.g1 PHD_FILE: MSMg01no090_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:05 2005
         (229 letters)



>mm_chr1_73638526_73639154
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgacgtttacaccacgtctgtgagcagacactgaaaaagtgttacataaagatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgacgtttacaccacgtctgtgagcagacactgaaaaagtgttacataaagatgtct 260

                                                                       
Query: 61  cctgcttaaatgagaccctttgagtagtaatggatcaatctcctagcaagaacctgctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcttaaatgagaccctttgagtagtaatggatcaatctcctagcaagaacctgctgc 320

                                                                       
Query: 121 tttcagagtcagaaataggcaggttactgaccccagaagtcaacatgcatttacacaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcagagtcagaaataggcaggttactgaccccagaagtcaacatgcatttacacaccg 380

                                                            
Query: 181 aattcaaggcagagaattctctagacagtgagcccagtctggtgacttt 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcaaggcagagaattctctagacagtgagcccagtctggtgacttt 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)