Query= MSMg01no091_e03.b1 MSMg01no091_e03.b1 CHROMAT_FILE:
MSMg01no091_e03.b1 PHD_FILE: MSMg01no091_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:42 2005
(530 letters)
>mm_chr1_69728504_69729434
Length = 931
Score = 988 bits (511), Expect = 0.0
Identities = 523/527 (99%), Gaps = 1/527 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaagtcttcactcattataaagtttctaactttacaataacctaagtcaggct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaagtcttcactcattataaagtttctaactttacaataacctaagtcaggct 264
Query: 65 agaagaaagaccaggaaagaagttctctccgataaccagaactgacttaagaatatgctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagaaagaccaggaaagaagttctctccgataaccagaactgacttaagaatatgctt 324
Query: 125 gtagttaagtagcttatttggtttgccccagttgttaaaccttcaaagaagtctccttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtagttaagtagcttatttggtttgccccagttgttaaaccttcaaagaagtctccttca 384
Query: 185 tcacccaaaaagataagttgtaaattaaactaaacttaacataaaccatgaccttcctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcacccaaaaagataagttgtaaattaaactaaacttaacataaaccatgaccttcctat 444
Query: 245 ttaagaccacaacatatatccaaagtgcagaggagacgacacctcaagcttgtgctaaga 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 ttaagaccacaacatatatccaaagtgcagaggagacgacacctcaagcttgagctaaga 504
Query: 305 gtgacaaaccacttgcactgaattaactgatctgataagacagtttcattaaaagacaga 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggcaaaccacttgcactgaattaactgatctgataagacagtttcattaaaagacaga 564
Query: 365 cttaacaaataaacgcatcttgtcctccacactgacagcacgcctttctatcacactcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttaacaaataaacgcatcttgtcctccacactgacagcacgcctttctatcacactcaa 624
Query: 425 cattgtttaggacactccatgtcagaaacactgaagactcaaactgccactcctgcaaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cattgtttaggacactccatgtcagaaacactgaagactcaaactgccactcctgcaaac 684
Query: 485 ccgaaagcatccttctgagaatctttttt-cccccttctggacaatg 530
|| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 ccaaaagcatccttctgagaatctttttttcccccttctggacaatg 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no091_e03.g1 MSMg01no091_e03.g1 CHROMAT_FILE:
MSMg01no091_e03.g1 PHD_FILE: MSMg01no091_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:42 2005
(458 letters)
>mm_chr1_69796351_69797208
Length = 858
Score = 824 bits (426), Expect = 0.0
Identities = 455/480 (94%), Gaps = 24/480 (5%)
Strand = Plus / Minus
Query: 1 cgatatattcttgtaaatcttcctatttttattaattgatatcatattggctcatgtcaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 480 cgatatattcttgtaaatcttcctatttttattaattgatatcatattggttcatgtcaa 421
Query: 61 cagactaagatgtgtttcaagtgtttggtatgttgcattatgattttatatgctactaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cagactaagatgtgtttcaagtgtttggtatgttgcattatgattttatatgctactaaa 361
Query: 121 caatattttaatatgatccctgtgccatgttatgtttgataaatatcatgtgatatctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caatattttaatatgatccctgtgccatgttatgtttgataaatatcatgtgatatctca 301
Query: 181 ttttcaattcatcttttgtgaacactctgttaagtatctgggacttaaaaagtatgaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttttcaattcatcttttgtgaacactctgttaagtatctgggacttaaaaagtatgaaat 241
Query: 241 ctgtgaatcttttccctttat------------------------ctttgaatcttttca 276
||||||||||||||||||||| |||||||||||||||
Sbjct: 240 ctgtgaatcttttccctttatctttgaatcttttcaattttttccctttgaatcttttca 181
Query: 277 atttctgaaaaggatacatggtggatttagttttttttgtctgcatattattcaaatttt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atttctgaaaaggatacatggtggatttagttttttttgtctgcatattattcaaatttt 121
Query: 337 gtttgccacaccctgccgtcacttttttccccatgtttttgtcttctgaatatatgattt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gtttgccacaccctgccgtcacttttttccccatgtttttgtcttctgaatatatgattt 61
Query: 397 cccccttctttttccaggtaagtggcttagaagtttatttatatttaaaatttttcattt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cccccttctttttccaggtaagtggcttagaagtttatttatatttaaaatttttcattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
