BAC Information

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BAC

Clone NameMSMg01-091F15
Chromosome1 (Build37)
Map Location 130,052,505 - 130,052,912
singlet/doubletsinglet
Overlap geneR3hdm1
Upstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, LOC667109, LOC100042111
Downstream geneUbxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091F15.T7 (MSMg01no091_f15.b1)MSMg01-091F15.TJ (MSMg01no091_f15.g1)
ACCAG309325AG309326
length715710
length of high quality
(start - end)
176 (130 - 305)408 (77 - 484)
definitionCHROMAT_FILE: MSMg01no091_f15.b1 PHD_FILE: MSMg01no091_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:50 2005CHROMAT_FILE: MSMg01no091_f15.g1 PHD_FILE: MSMg01no091_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGGCGGCGCAATACGACTCACTTTTCGTAGCCGAGGCGCGGA
ANTCTCTNCTTCCCTACACCACACACACACACACACACACACACACACAC
ACACACACACACACTTTTACCCCCCTTCAAGAGTAGATGTACTATATCTT
CTGTAGGACAAATTGAAAATTTAAGAGTTCTAGATATAATAAAATCTATA
TTATGGGCTATATATAGTGGCACAAGCCTTTAATCCCAGGCAGAGGCATG
TTTATCTCTGTAGATTCAAGACCAGCCTGGTCTATACAGCAAGTTCTAGG
ACAGCCAGGCCTATTTAGTCCTTCTAAACAAAACAGAAAAACTACATTAT
GGGATTTAGCTACCCCCCGCGAAGAGCATAATTGTCCTTTATTTTAAGTA
CAGGGGAATGATCTCGGCTCTCCAATCCATACAAAGCTTTAAAGTATAGT
GACCGTTCTGGCTAGTGGAGGGGGCTCAAGACACTTCTGACAGCGCAGGC
ATACGACATACCAGCAGTGCCCCTCTCAGGACAAGCTCACCTCCCTCATG
GATCTCAAATTCTAACACGTGCCTGATACACGGGTCACTAGTTCGGCGAA
CTCCTATTTTGTCCAGCCCCGCTATCCACAGGTTAAATCTGCGCCACCAT
CTTTTTATATTTCTTGTTACCACCCGGAGATCTTTGCGGCGGCGCCCCAC
CTCTATTTTCTACTC
TCACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGGCCCTGGCTACTCTTCAA
TTCCTGACCTTTCTTCCTCTGCCTCCAAGTGCTGGTGTCACAGATCTGTG
CCACCAAGCCTAACTTAAATGGTAATTTTCTAAGAAATTAGGAAAAATAA
CATTTCCCCATGTCATTTTTAATTAAACTTTTTAAAACAAGAAAATTCCC
TTCTCTAATCAGTATGGTCATTAGCAGTGATTGCATTAGAGAAAGTTTGC
AAAGAGTCTTTGTATTTGTGATTAAAATAATGATTCAGGCTGGAAAGATG
GAAATTACTTGAAATCAGCCTAAGCTATGTAGTGAGACTTATCTTACAAC
AAAAGTTAATAATGCGCAGTTATCTTTTAACTTAATCTGAGGTTACTAGC
TATAACCTACTAGTAAACATTCGCTTTTCTTTTGTACTTTTAAGACATCG
CCTGAAATATATACACAACGTACACTACATTTTGGAAAGAACAAGCATTG
TTTCCCCAGTCTATACCCCAATACATATTGTTTATCAATACCAGAACGGC
TATATCCACATTTTGTTAGTAACTGTTACGGGCTACAAGAGACCTGGTTT
TTGTTAACATCTACCGTTATATATTCACTTTCGAGATAAACTCCCCAGTA
ACCCGAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_f15.g1 MSMg01no091_f15.g1 CHROMAT_FILE:
MSMg01no091_f15.g1 PHD_FILE: MSMg01no091_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:50 2005
         (408 letters)



>mm_chr1_130052305_130053112
          Length = 808

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtggccctggctactcttcaattcctgacctttcttcctctgcctccaagtgctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtggccctggctactcttcaattcctgacctttcttcctctgcctccaagtgctggt 260

                                                                       
Query: 61  gtcacagatctgtgccaccaagcctaacttaaatggtaattttctaagaaattaggaaaa 120
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gtcacagatctgtgccaccatgcctaacttaaattgtaattttctaagaaattaggaaaa 320

                                                                       
Query: 121 ataacatttccccatgtcatttttaattaaactttttaaaacaagaaaattcccttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacatttccccatgtcatttttaattaaactttttaaaacaagaaaattcccttctct 380

                                                                       
Query: 181 aatcagtatggtcattagcagtgattgcattagagaaagtttgcaaagagtctttgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcagtatggtcattagcagtgattgcattagagaaagtttgcaaagagtctttgtatt 440

                                                                       
Query: 241 tgtgattaaaataatgattcaggctggaaagatggaaattacttgaaatcagcctaagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgattaaaataatgattcaggctggaaagatggaaattacttgaaatcagcctaagct 500

                                                                       
Query: 301 atgtagtgagacttatcttacaacaaaagttaataatgcgcagttatcttttaacttaat 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtagtgagacttatcttaaaacaaaagttaataatgcgcagttatcttttaacttaat 560

                                                           
Query: 361 ctgaggttactagctataacctactagtaaacattcgcttttcttttg 408
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 ctgaggttactagctataacctactagtaaacattcgtttttcttttg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)