BAC Information

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BAC

Clone NameMSMg01-091I03
Chromosome1 (Build37)
Map Location 90,101,342 - 90,101,789
singlet/doubletsinglet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3
Upstream geneChrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream geneUgt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I03.T7 (MSMg01no091_i03.b1)MSMg01-091I03.TJ (MSMg01no091_i03.g1)
ACCAG309440AG309441
length691693
length of high quality
(start - end)
449 (66 - 514)413 (73 - 485)
definitionCHROMAT_FILE: MSMg01no091_i03.b1 PHD_FILE: MSMg01no091_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:03 2005CHROMAT_FILE: MSMg01no091_i03.g1 PHD_FILE: MSMg01no091_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAAATCCGCGGAATTCCC
AGGATTTGCAGGAGACTTCGCTTCGTTAGATACTGGATTCACATCCTTCG
GTTCTCCAGGAAACTCGGGCCTTTCTTCTTTCTCCATGTCTTGCGGCGGT
GGGGCGGCAGGCAACTACAAGTCGGTGTCAACCTCCACCGAAATAATTAA
TGGCAAAAAAATCACCACCAAGAGAATCGTTGAGAATGGTCAAGAAAGGG
TGGAAGTGGAAGAAGATGGAGAGTTAAAGTCCCTGATAATTAATGGCAAA
GAGCAGCTGCTTCGCATCTTTACTCAGTAAAGACGTAAAGTGTCTTTTAA
GGACTATCAGGACTTTTTTGTTTAAACGCGTTTTCAAGGGAACTCTACTT
TCAGAACAACTGTATTCCAGACATTATATGCAGCTCATGTCGGTGCCTCT
TGTTATTGTTGGGATCGCAGGGATAAGATCTTTCTTGGTCTTTATGCCTG
TTGTAAATATCTGTATGCCTTTGGCACTTATTAAACTTAATCCTGAAGCA
GACCACTGTTATGTTCTAGTGCTAGGAAACACTGTTCACAACACCTAAAA
CCACCAATGCCCATTTTGTTGAAATTTCCACTCAAAGCTTTCCTTAAACT
TTATAGGTCCCACTTCCCCCATGGGGCCCCGGGTGAAAGAA
AATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTGGACAAGGTCAGAGAAGGAGAAATT
CTGCTAATGAAGGGAAGGGAGTCTTCGATTACTTACTTGCCAAGCTCCAC
AAGGCTATCTGGTCAATTGTAGACTTTGACCTTAATCAGCAGAGTTTTCC
CACATACATTCTTTTTTCCCCCCTGGAAAGAATGGTAACTCAATCACTTG
GTACAGAAACTAAAATCCTAATCTTGTAAGCCTTATTATATCTAAATCCT
CCAGTGGTGAATCCTACAGATCTGCCCATTGAAACCAGGAGACACTCAAA
CCTACAGCTTGTCATCAGTCTATCCCAGTCCAAAAAGCCCTCTCTCTCTC
CTGCTTCCTCTCTTCCCTTGCCCAACACAGAAGTCCCGCCTACTCACCCA
GTGATTGGCTCCTTTATGAATATTAGGGGATTGGTTCACAAGAAGTCACA
TGTACATGACTCACACTTCCCCCTTTCTGTTTTATAAAAACAAAACCTTT
CTCTCATATATAAATAGATCACAACTATTACCATTTTGTAACTCATAAGG
TATAAAATAGAACTAATGCCCAGCCTGTCCTTTATGTCATTAAAATAGAA
CACTGGCCTCTATCTTAATTTAAAGACTTATAACTTTACCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i03.b1 MSMg01no091_i03.b1 CHROMAT_FILE:
MSMg01no091_i03.b1 PHD_FILE: MSMg01no091_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:03 2005
         (449 letters)



>mm_chr1_90101142_90101989
          Length = 848

 Score =  830 bits (429), Expect = 0.0
 Identities = 444/449 (98%), Gaps = 1/449 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcgcttcgttagatactggattcacatccttcggttctccaggaaactcgggcctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cttcgcttcgttagatactggattcacatccttcggttctccaggaaactcgggcctttc 589

                                                                       
Query: 61  ttctttctccatgtcttgcggcggtggggcggcaggcaactacaagtcggtgtcaacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttctttctccatgtcttgcggcggtggggcggcaggcaactacaagtcggtgtcaacctc 529

                                                                       
Query: 121 caccgaaataattaatggcaaaaaaatcaccaccaagagaatcgttgagaatggtcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caccgaaataattaatggcaaaaaaatcaccaccaagagaatcgttgagaatggtcaaga 469

                                                                       
Query: 181 aagggtggaagtggaagaagatggagagttaaagtccctgataattaatggcaaagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagggtggaagtggaagaagatggagagttaaagtccctgataattaatggcaaagagca 409

                                                                       
Query: 241 gctgcttcgcatctttactcagtaaagacgtaaagtgtcttttaaggactatcaggactt 300
           |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 408 gctgcttcgcatcaatactcagtaaagac-taaagtgtcttttaaggactatcaggactt 350

                                                                       
Query: 301 ttttgtttaaacgcgttttcaagggaactctactttcagaacaactgtattccagacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttttgtttaaacgcgttttcaagggaactctactttcagaacaactgtattccagacatt 290

                                                                       
Query: 361 atatgcagctcatgtcggtgcctcttgttattgttgggatcgcagggataagatctttct 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 289 atatgcagctcatgtcggtgcctcttgttattgttgggatcgcagggataggatctctct 230

                                        
Query: 421 tggtctttatgcctgttgtaaatatctgt 449
           |||||||||||||||||||||||||||||
Sbjct: 229 tggtctttatgcctgttgtaaatatctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space:   367882
Effective search space used:   367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)