BAC Information

Click to search

BAC

Clone NameMSMg01-091I22
Chromosome1 (Build37)
Map Location 31,703,617 - 31,703,988
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I22.T7 (MSMg01no091_i22.b1)MSMg01-091I22.TJ (MSMg01no091_i22.g1)
ACCAG309475AG309476
length707706
length of high quality
(start - end)
372 (37 - 408)446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no091_i22.b1 PHD_FILE: MSMg01no091_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:07 2005CHROMAT_FILE: MSMg01no091_i22.g1 PHD_FILE: MSMg01no091_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
TTTCTCCCACTTTCTCCATTTTATCCACTCTACGACCTCAGTGGCTGAGA
TAGTACCATTCACTCCCAAGGGTGGGTTGTCCTCAGTCACAGTTTTCTAG
AAGCATGATCAGAGACTCATCCAAAGGGCCATTTCATCCAGAGCATTCTA
AAGCCCAATGAGGATCAACCATCAATAACTAAAGACCCAGGGTAACAGTG
CTGGGAGGTTGGTCTTATTGAAATGTTCTGGTCTGTTATCAGGAATGGAT
TAATACTGATAAAAAAAAAAAGATGTTACCACACTATTCACTATGCTCTC
TGCTTTGTTGTTTTTCTGCCTGGTGAAGACAGAGTATGGGTCTTTGTCTT
TCTGTGGCTTACTACATGACAATGACTAAAAACACTTGATGCTGACTCTT
TGATCTTAGAGTTGATAGCCCAAGGTTGTGAGAAATAAATTTTTATTGTT
TACACATTACTGACTGTTGAACTTTGTTATATAGCACAAGCTACTTACTA
ACCGATTAAATTCAACCTGATACAAGTTGGAGCTTATGAAATTCTACTGA
TCCATGACCTTCCACCTGATGTACCATTTGACGACTACACGACATTCCAT
TAATACTTACATTATGTTCTGCCACATATAGCTTAATTATCCCCCGCTCC
ATTTACG
CTCGATGATGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCACACTTTTTA
ATGAGATTATTTAATTTCTCGCCGTTCAGCTTCTTGAGCTCTTTGGATAT
ATTGGATATTAGTCCCCTATAAGATTTAGGATTGGTAAAAATTCTTTCCT
AATTTGTTGGTGGCCTTTTGTCTTATTGACAGTGTCCTTTACCCTATAGA
AGTTTTGAAATTTTATGAGGTCCCATTTGTCGACTCTTGATCTTAAAGCA
AAAGCCATCACTGTTCTCTTTAGGAATTTTTCCCCTGTGCCCATATATTC
CAGGGTTTTCCCCACTTTCTCCTCTATAAATTTCAGGGTCTCTGGGGTTG
TTTGTTTGTTTGTTTTTTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTGT
CCTGGACCTCACTCTTTATACCAGGCTGACCTTGAACTCAGAGATCCATC
TGTCTCTGCCTCCCAAGTGTTTGGGATTAAAGGCTTGCACCACCATGCCC
TGCAGGGTCTCCGGTTTTATGTGGATGCCTTTGATCCACTTAGACTTGAG
CTTTGTCCAGGACATAAGAATGGATTAATTCTCATTCTTCCACATGACAA
CCGTCACTTGTGCCAGTACCATTTGTTGAAAATGCCCTTTTGTTTCACTG
GATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i22.b1 MSMg01no091_i22.b1 CHROMAT_FILE:
MSMg01no091_i22.b1 PHD_FILE: MSMg01no091_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:07 2005
         (372 letters)



>mm_chr1_31703227_31704001
          Length = 775

 Score =  648 bits (335), Expect = 0.0
 Identities = 362/373 (97%), Gaps = 6/373 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcactttc--tcccactttctccattttatccactctacgacctcagtggctga 62
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattctcactttcagt-ccactttctccattttatccactctacgacctcagtggctga 704

                                                                       
Query: 63  gatagtaccattcactcccaagggtgggttgtcctcagtcacagttttctagaagcatga 122
           |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gatagtaccactcactttcaagggtgggttgtcctcagtcacagttttctagaagcatga 644

                                                                       
Query: 123 tcagagactcatccaaagggccatttcatccagagcattctaaagcccaatgaggatcaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcagagactcatccaaagggccatttcatccagagcattctaaagcccaatgaggatcaa 584

                                                                       
Query: 183 ccatcaataactaaagacccagggtaacagtgctgggaggttggtcttattgaaatgttc 242
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 583 ccatcaaaaactaaagacccagggtaacagtgctgggaggttggtcttattgaagtgttc 524

                                                                       
Query: 243 tggtctgttatcaggaatggattaatactgat---aaaaaaaaaaagatgttaccacact 299
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 523 tggtctgttatcaggaatggattaatactgataaaaaaaaaaaaaagatgttaccacact 464

                                                                       
Query: 300 attcactatgctctctgctttgttgtttttctgcctggtgaagacagagtatgggtcttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 attcactatgctctctgctttgttgtttttctgcctggtgaagacagagtatgggtcttt 404

                        
Query: 360 gtctttctgtggc 372
           |||||||||||||
Sbjct: 403 gtctttctgtggc 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 775
Length adjustment: 9
Effective length of query: 363
Effective length of database: 766
Effective search space:   278058
Effective search space used:   278058
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)