BAC Information

Click to search

BAC

Clone NameMSMg01-091J19
Chromosome1 (Build37)
Map Location 64,998,832 - 64,999,183
singlet/doubletsinglet
Overlap gene9430067K14Rik
Upstream geneOTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, LOC667245
Downstream geneLOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091J19.T7 (MSMg01no091_j19.b1)MSMg01-091J19.TJ (MSMg01no091_j19.g1)
ACCAG309514AG309515
length716718
length of high quality
(start - end)
360 (43 - 402)410 (73 - 482)
definitionCHROMAT_FILE: MSMg01no091_j19.b1 PHD_FILE: MSMg01no091_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:11 2005CHROMAT_FILE: MSMg01no091_j19.g1 PHD_FILE: MSMg01no091_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATTTTACCTGAGCTAGTGAGCTTCCTACCTGGGCCTCCGGAGTGCT
GCGATTATAGGCATGTGTTGCCGCCACATCTAGCTAAAAGCTCTTGTTTT
CTTTAAGATGAATGCGTTTAGATGTTAGGTTAACAACCCTCTTCCCCTCC
CCCTTGTTTATGTGTACAGCTAAGAAATAATGGACTGAGGAATATGTAAT
TATTTGACAGAAAGGAAAAAGAAGAGCTTGTTATTAGGACCAGAAAAACC
AAGCTAGATAGAGGCCAGCACCACTAGCTGTAAGCAGCCAAGGCTTATGA
GTATTGAATATTTATTAGGCAGCAGATGCAAGGTGATCTCAGTATGTAGC
CCTTTCAAAAGATTTGGAACCAGGTCCTGCATTTACATGCTTACAAAGTA
GGCTGAGATTGATACTATTAAACTAGCTTCAGAAGGCCTGATTTCAACCT
AGATAAGATTAGTAATATAGGCCTAGTTCTTAGGGTTCTTCTTTTCTAGA
TAGTTTCCAGGGGCATCAGGCTATGGCTGTCCCTTCTCTTTTCCCAGCGA
CTGGCCTCATCTTCTGTCCCACATCATCCTTACCTACGCCCTCAGAGCAG
CATCACTAATGTCTGCCTTCACCGTGCCTCCATGCTATCTGCCGGCCTCG
CAAACTATAAAATCTT
CAATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGA
AGCACGTGGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGCTTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACTACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCCG
TAATATCTCTCCTGGGCATATATCCAGAAGAAATCGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAA
AGAACCCACATGCCCCTCAACAGAGGAATGGATACTGAACATGCGGCACA
TTTACACTATGGAGTGCTACTAAGCTATTAAAAAGAATTGAGTTTATGAN
ATTCCTTGGCATATGGATGGCATTGTACGGCATCATCCTGAGTGAGGTAC
CCCCCCCACAAAAGAGCTCATACCATATGCACTCACTGATAACCGCATAT
AGTCTCGAAACTCACAATGCCCCATATTTAATACTCCTTCTGTCACCAAA
TGAAACTTCACAACAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_j19.b1 MSMg01no091_j19.b1 CHROMAT_FILE:
MSMg01no091_j19.b1 PHD_FILE: MSMg01no091_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:11 2005
         (360 letters)



>mm_chr1_64998628_64999383
          Length = 756

 Score =  638 bits (330), Expect = 0.0
 Identities = 348/356 (97%), Gaps = 4/356 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcattttacctgagctagtgagcttcctacctgggcctccggagtgctgcgatt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 556 gaattctcattttatctgagctagtgagcttcctacctgggcctccggagtgctgtgatt 497

                                                                       
Query: 65  ataggcatgtgttgccgccacatctagctaaaagctcttgttttctttaagatgaatgcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ataggcatgtgttgccgccacatctagctaaaagctcttgttttctttaagatgaatgcg 437

                                                                       
Query: 125 tttagatgttaggttaacaaccctcttcccctcccccttgtttatgtgtacagctaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttagatgttaggttaacaaccctcttcccctcccccttgtttatgtgtacagctaagaa 377

                                                                       
Query: 185 ataatggactgaggaatatgtaattatttgacagaaaggaaaaagaagagcttgttatta 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ataagggactgaggaatatgtaattatttgacagaaaggaaaaagaagagcttgttatta 317

                                                                       
Query: 245 ggaccagaaaaaccaagctagatagaggccagcaccactagctgtaagcagccaaggctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggaccagaaaaaccaagctagatagaggccagcaccactagctgtaagcagccaaggctt 257

                                                                   
Query: 305 atgagtattgaatatttattaggcagcagatgcaaggtgatctcagtatgtagccc 360
           ||||||||||||||||||||     |||||||||||||||||||||||||||||||
Sbjct: 256 atgagtattgaatatttatt----tgcagatgcaaggtgatctcagtatgtagccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 756
Length adjustment: 9
Effective length of query: 351
Effective length of database: 747
Effective search space:   262197
Effective search space used:   262197
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)