BAC Information

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BAC

Clone NameMSMg01-091L03
Chromosome1 (Build37)
Map Location 187,325,263 - 187,325,626
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik
Downstream geneLOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091L03.T7 (MSMg01no091_l03.b1)MSMg01-091L03.TJ (MSMg01no091_l03.g1)
ACCAG309576AG309577
length712708
length of high quality
(start - end)
235 (48 - 282)364 (81 - 444)
definitionCHROMAT_FILE: MSMg01no091_l03.b1 PHD_FILE: MSMg01no091_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:17 2005CHROMAT_FILE: MSMg01no091_l03.g1 PHD_FILE: MSMg01no091_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTGGCTCACCAGTCTAGCTAACTAGTGAGCTCCGATGTCAGT
AGAACCCCATCGGTCTCTAAAACAGTGAGCACTAAAGAAAGATCTGTGGT
GTTGAGCTCTACCCTCCACTCTCCCTGGAAGGCAGGAAGCACAGCATGCG
GATGTGAGCCGCATACTTCTGCTCTGAATCAGTTTCTTGCTGCCTATGGC
AGCTCTGAGTGTCTTAACTCTCCATCCTCAGACCAGTGTATACTGACTTT
TGGGAAACTGGTAAAAGTTATAACTATGCCTAGTGTTGTACAGAGTTGAT
ACAGATTTCACAGGGCCACCTGGAAGTTGCTGCTAATATGTGGCTTTAGC
TATAGTGAAGCCTGCCCTCCACAATGCACATGCTGCTCTGTAGACCACTA
GTCCAATCTACTGAGATCGACTCGCCTACCCTGCCCTGTTTTCCTAACTC
ACGCCTCAATGTTAACTCATACATCACGACCTTTATATTGTGATCCTAGG
CCATCCGGGACCCTAGTGGTCCCCTGTACTTGCCTCTCCCCTTATTTTTT
CCGTCCCCCCTCCTCATCTCTTCTTTTCATGGCACCCCTCCCTTCCCTAC
CACTAACTACCTTTCCCCCACACATTCTTTACCCCGCCCCCCTGCCTATT
GTTTTTTATCTT
TTCCCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTACATCGTTAAAGATGC
TTACTTTTAGTTAACATAAAAGAGTTAGCACGACTTTGTTTTGTTTTGTG
AGGCAGCATCTTGCCGGTGACATCAGCGATGGGAGCAGAGTCTCTGGTCA
TCTAAGAGAGGAAGAAAAGACAAAAAGCATTTGCTCTATGCATCCTTGCG
GCTTCTATCACATCTCCCCTTTTTTGCCATTTTTGCCCGATAAGGCAGTT
GTTTATCTGCAGCTACATTTGGGGCTTGGTTATATGATAGAATTCAAGTA
ATCATTTGACTGCATTTGTAGGGGGCTTTTCCCCTCCCAAGGAGAATTGT
TCATTTAACTTATGTCATTTTTATTTCTCCTGGCCTTACCAAAAAGTATG
TAATGAACAAAGGTCATGTAAAAGATACCTCTGAAACTGAAGGGTGCGCT
TGAGCTTTGATGATTCTGCGGGAAAAAATACTGTCTTCTTGGGAGAGAGA
TCAATAACTACCCCTGCCTAACCGAGATGAAGCACGCCCAGCTGGCGCCA
GGTTCAGGGCATTATGAATGTCATCCCACGTATTCACCCGCACGTTTGTC
ACGTTAACTGATCCCGATTCTTGCCACCTTGTTACCCTGACCCCTTTAAC
CCGCAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_l03.g1 MSMg01no091_l03.g1 CHROMAT_FILE:
MSMg01no091_l03.g1 PHD_FILE: MSMg01no091_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:17 2005
         (364 letters)



>mm_chr1_187325063_187325826
          Length = 764

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttacatcgttaaagatgcttacttttagttaacataaaagagttagcacgactttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 tcttacatcgttaaagatgcttacttttagttaacataaaagagttagcacgattttgtt 505

                                                                       
Query: 61  ttgttttgtgaggcagcatcttgccggtgacatcagcgatgggagcagagtctctggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgttttgtgaggcagcatcttgccggtgacatcagcgatgggagcagagtctctggtca 445

                                                                       
Query: 121 tctaagagaggaagaaaagacaaaaagcatttgctctatgcatccttgcggcttctatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctaagagaggaagaaaagacaaaaagcatttgctctatgcatccttgcggcttctatca 385

                                                                       
Query: 181 catctccccttttttgccatttttgcccgataaggcagttgtttatctgcagctacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 catctccccttttttgccatttttgcccgataaggcagttgtttatctgcagctacattc 325

                                                                       
Query: 241 ggggcttggttatatgatagaattcaagtaatcatttgactgcatttgtagggggctttt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 ggggcttggttatatgatagaattcaagtaatcatttgactgtatttgtagggggctttt 265

                                                                       
Query: 301 cccctcccaaggagaattgttcatttaacttatgtcatttttatttctcctggccttacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccctcccaaggagaattgttcatttaacttatgtcatttttatttctcctggccttacc 205

               
Query: 361 aaaa 364
           ||||
Sbjct: 204 aaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)