BAC Information

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BAC

Clone NameMSMg01-091M11
Chromosome1 (Build37)
Map Location 131,033,492 - 131,033,814
singlet/doubletsinglet
Overlap genenone
Upstream geneR3hdm1, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b, LOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091M11.T7 (MSMg01no091_m11.b1)MSMg01-091M11.TJ (MSMg01no091_m11.g1)
ACCAG309636AG309637
length694695
length of high quality
(start - end)
327 (69 - 395)234 (131 - 364)
definitionCHROMAT_FILE: MSMg01no091_m11.b1 PHD_FILE: MSMg01no091_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:24 2005CHROMAT_FILE: MSMg01no091_m11.g1 PHD_FILE: MSMg01no091_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATAGCCATATACCAAGAGCAAAACCACCAGTTCATTGACTTTATCGTTC
TGTTAACTTGGGACACTCTCACAAATTAGATCTGCAAGGGTCATAAAATG
TGTCTAGTCCCATTTTCTCAATTCCCATGGAAGAACACTGAAAAGCCTAC
AAGCTTACGTCACACGACTGACCATGGTGGTTTCCTAATGCTCAGTGCTC
TGTGTTTCAAATGCATCACACCAAGCATGCTTTGACTGTTGTTGTTGCTG
CTGCTGCTGTTGTTACCTTCTAAGTGCTATTCCCACAAGATAACAAACCA
AGGAATGCAAACTCAGCAACTACAGAAAAGGTCCTCAGGATCGCAGGCTA
CGGGTAGCTGGAGGCCAGCTGGATATTGCTGAAGTGCCTCCCGTGCAAAC
ATGAAGACCTGAGTTTTAATTCCCAGCACTGTTGCACAGAAAAAGAAAAA
GCCAGGCTTGTGCTTTAATCAATCTCAGGGCTGGCAGGCACAGATGGGAT
GTCCCCCAAGGCTGGCCCGATCGCCTATCTGAACTGATAAGCCTCACAAC
ATAAGGCTGATAATGATGCCAGCCCCCGAACTCCATATGCATGCTCGTAA
ATGTTTCGTGCGTGTTGTCTTTGTCTTAATACATAAACATCAAC
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAGCTTGATAAACAGCTTCAATGAA
GTAGCTGGATATAAAATTATCTCCACAAATCAATGGCCTTTCTCTACACA
AAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAAT
AGAAACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGA
AAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAA
GATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA
TATAGTAAAAATGGTTATCTTGCCAAAAGCATTCTACAGATTCAATGCAA
TCCCCATCAAAATCCCAACTCAATTCTTCAACGAATTATAAAGGGTGATC
TGCAAATTCATCTGGAATAACAAAAACCCTAGGATATCAAAAACTCTTCT
CAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAACTAAAGCTGT
ACTACAGAGCAATTGTGATAAAAAACTTCGTGTTACTAGTATAGTGACTC
AGAAGTAGACCTATGGAAATAGAATTGAAAACCCAAAAATGAACCCACCC
CCCTAAGGCCACTTTATCTTTGACTAGGGAAGCAAAAACATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_m11.b1 MSMg01no091_m11.b1 CHROMAT_FILE:
MSMg01no091_m11.b1 PHD_FILE: MSMg01no091_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:24 2005
         (327 letters)



>mm_chr1_131033291_131034014
          Length = 724

 Score =  607 bits (314), Expect = e-178
 Identities = 322/326 (98%), Gaps = 3/326 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   caaaaccaccagttcattgactttatcgttctgttaacttgggacactctcacaaattag 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 524 caaaaccaccagttcattgactttatcgttctgttaacttgggacactctcataaattag 465

                                                                       
Query: 62  atctgcaagggtcataaaatgtgtctagtcccattttctcaattcccatggaagaacact 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atctgcaagggtcataaaatgtgtctagtcccattttctcaattcccatggaagaacact 405

                                                                       
Query: 122 gaaaagcctacaagcttacgtcacacgactgaccatggtggtttcctaatgctcagtgct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaaaagcctacaagcttacgtcacacgactgaccatggtggtttcctaatgctcagtgct 345

                                                                       
Query: 182 ctgtgtttcaaatgcatcacaccaagcatgctttgactgttgttgttgctgctgctgctg 241
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 344 ctgtgtttcaaatgcatcacaccaagcatgctttgactgttgttg---ctgctgctgctg 288

                                                                       
Query: 242 ttgttaccttctaagtgctattcccacaagataacaaaccaaggaatgcaaactcagcaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttgttaccttctaagtgctattcccacaagataacaaaccaaggaatgcaaactcagcaa 228

                                     
Query: 302 ctacagaaaaggtcctcaggatcgca 327
           ||||||||||||||||||||||||||
Sbjct: 227 ctacagaaaaggtcctcaggatcgca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 724
Length adjustment: 9
Effective length of query: 318
Effective length of database: 715
Effective search space:   227370
Effective search space used:   227370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)