BAC Information

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BAC

Clone NameMSMg01-092D01
Chromosome1 (Build37)
Map Location 11,565,878 - 11,566,347
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092D01.T7 (MSMg01no092_d01.b1)MSMg01-092D01.TJ (MSMg01no092_d01.g1)
ACCAG309939AG309940
length712710
length of high quality
(start - end)
488 (50 - 537)470 (77 - 546)
definitionCHROMAT_FILE: MSMg01no092_d01.b1 PHD_FILE: MSMg01no092_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:58 2005CHROMAT_FILE: MSMg01no092_d01.g1 PHD_FILE: MSMg01no092_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTCTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCTTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTAAGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTTATCACAA
TTGCTCTGTAAAAAAGCTTTAGGTCAGGCTTGATGATTCCCCCCGAGGTT
CTTTTTTCCTTG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGAGAATTAGAAGGTTATGTG
TCCAGCTTGGAATTGTTCCTATACTACCAGTTGAGTGGCCAGATTTTTTC
TGAAGTTAGAGACCACTTATCCACCCATACAGGAACATCACTTTTCCTAG
TAATTTTATCTGCATGAAGTGCAGACTTGTCAAATGGTCTCTATTAACAA
TACCCTAGACCTGTTTTTCCTTTTCTTGGGGTAACTATAAGGGGCTCTAA
TTTTCTCTGATTCTGCTTTCTTAATCCTCGGTTAGGTAAATAACCACAAA
CAAACATTTGTTGTGTAGCTTTGTTGTTGGGACTGTATAAAAGGACTTCC
ATGTTCTTCATAGTATCTCTTGCCCATAGATTAACAGGCAAATTANAAAT
AATGTAATGTTGAAAATATCCACGGTGGCCTTCCTCATCTTCCCAATGTA
AGATATCACTGGTTTGTTTCGTACTCTGACTTTGCCCTATCCCTTGTAAT
TGAGTAATAGTAGTTGTTTTATGCCCAGAAGCAGACCAATGGAAAGAAGT
GATTATAGATATATCTGCTTCTGTATCCAGCAGCCCTCTAAATATTTTCC
ATTTAAACTTAAAACTAAATCAGGTCTCTCAACTTTTATTGCTTGGACCT
CATAAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_d01.g1 MSMg01no092_d01.g1 CHROMAT_FILE:
MSMg01no092_d01.g1 PHD_FILE: MSMg01no092_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:58 2005
         (470 letters)



>mm_chr1_11565678_11566547
          Length = 870

 Score =  826 bits (427), Expect = 0.0
 Identities = 459/470 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggagaattagaaggttatgtgtccagcttggaattgttcctatactaccagttgagt 60
           ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct: 201 cagggagaattagaaggttatgtgtccagcttgcaattgttcctacactagcagttgagt 260

                                                                       
Query: 61  ggccagattttttctgaagttagagaccacttatccacccatacaggaacatcacttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagattttttctgaagttagagaccacttatccacccatacaggaacatcacttttc 320

                                                                       
Query: 121 ctagtaattttatctgcatgaagtgcagacttgtcaaatggtctctattaacaataccct 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctagtaattttatctgcatgaagtgcagacttgtcaaatggtccctattaacaataccct 380

                                                                       
Query: 181 agacctgtttttccttttcttggggtaactataaggggctctaattttctctgattctgc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agacctgtttttccttttcttggggtaactataaggagctctaattttctctgattctgc 440

                                                                       
Query: 241 tttcttaatcctcggttaggtaaataaccacaaacaaacatttgttgtgtagctttgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttaatcctcggttaggtaaataaccacaaacaaacatttgttgtgtagctttgttg 500

                                                                       
Query: 301 ttgggactgtataaaaggacttccatgttcttcatagtatctcttgcccatagattaaca 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ttgggactgtataaaaggacttccatgttcttcatagtatctcttgcccataaattaaca 560

                                                                       
Query: 361 ggcaaattanaaataatgtaatgttgaaaatatccacggtggccttcctcatcttcccaa 420
           ||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 561 ggcaagttagaaataatgtaatgttgaaaatatccatggtggccttcctcattttcccaa 620

                                                             
Query: 421 tgtaagatatcactggtttgtttcgtactctgactttgccctatcccttg 470
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tgtaagatatcactggtttgtttcgtactctgactttgctctatcccttg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)