BAC Information

Click to search

BAC

Clone NameMSMg01-092E08
Chromosome1 (Build37)
Map Location 95,876,665 - 95,876,862
singlet/doubletsinglet
Overlap geneEG666009
Upstream geneGpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596
Downstream geneEG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092E08.T7 (MSMg01no092_e08.b1)MSMg01-092E08.TJ (MSMg01no092_e08.g1)
ACCAG310000AG310001
length725723
length of high quality
(start - end)
198 (125 - 322)227 (72 - 298)
definitionCHROMAT_FILE: MSMg01no092_e08.b1 PHD_FILE: MSMg01no092_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:04 2005CHROMAT_FILE: MSMg01no092_e08.g1 PHD_FILE: MSMg01no092_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
CACCTGTTCCAGGACGGTCGTCAGCTTCTCAGCATCATGTCCTGCACTGG
AGCCTGAGGTCTCAACCACGACATAGAATGGACTCTCTGAAAGGAAGCAG
GAGAGGCACTGTGAGCCACAGTCTGGACTGCCAGCATCCACAGTTAGAAC
CACCTTCCTCCCGGTCATGCAACTAAGACAGCTCTTCCCGGGTGCATGAC
GTGACCTACAGAACAGGAAGCATTCAGGCTCGCTAAATTTCACATGGGTT
AAATATAAGTTTTCTGCTGACAGAGAAATAGACTAAGGTGACCCTCTGCA
GGAAACCCCACCCTGCTCACTTAGCCCCATGCCTGGTTCCAGTTCCATAC
ATCCCACCAGCCTGATTCATATAGTCTGGTACAGTCAGATAGCTGTGGGC
TCTAAGAGTCTCTTCTTACAGACTACAGAACCCCGAGGAAAGGACTCTGT
GCGGATGATCAGCTCACACATGAACACTACATGCTCAAAGACAGCCATTT
CTATCCACAAGAACTGAATGCTTTAAACATTCTACCAATTAATAGTGTAT
TACCAACTCTTCCGAGGTGCCCCGTCCTCTTTCCTTACCTCTCCCTTACC
ACTTCTTTCCCGACATATCCCTACAAGTTCACCCCTACTTACACACTGAT
AGCTACGTCGCTAAAACCCCCCCGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGTTCTGTGAATACACAGAATACATAGATG
CTCAGTCCTTACTCCTTTAATTTGCAAGATGCAGACAGGACTCTAGGGCT
GGAGAGTTGACTCAACAGTTAAGAGCACTTGCTGCTTTGTGTAGGACAGG
TTTGGCTTCCAGCACCCATATGGTGTTTCACAACCATTAACCCCAGTTCT
AGGCTATCCAACCCCTCTTCTGACCTCTGAGGGTGATGAACATACATGCA
GGTAAAGCACTCAGACACACGAGACAACCATATATAAAGGATTAGTTACG
TTTGTGACAATAAAATTGTTAATTTCACACTATAAAATCAACACCTCCAG
GATAATTTAAACTACATATTCTAAATATTTAGCCAGTAACAGTATATTTT
ACTACTATATTCCAGCAAGATCTTCTTTGTAAAAAACAAGTGCTCCCATG
TGCCCTATTCCTAGGCATTTACTGTTTCCAAAGAAAAGCCTAAACTCTTT
GCTACTTTATAATTGAAACAGCCTCACGACCACACTCTCGTGTCCAATAA
CATATTTATCAGCTTGCCCGCCTCATAATTCCCTTTTCTGAATAACACAA
ATATTTTCTGTGTTTATCGTCGACATGGTTCCTCCGGATCAACGCTTTTT
GCTTTTCACTCCTGACGACCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_e08.b1 MSMg01no092_e08.b1 CHROMAT_FILE:
MSMg01no092_e08.b1 PHD_FILE: MSMg01no092_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:04 2005
         (198 letters)



>mm_chr1_95876465_95877062
          Length = 598

 Score =  360 bits (186), Expect = e-104
 Identities = 195/198 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatggactctctgaaaggaagcaggagaggcactgtgagccacagtctggactgccag 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agaatggactatctgaaaggaagcaggagaggcactgtgagccacagtctggactgccag 339

                                                                       
Query: 61  catccacagttagaaccaccttcctcccggtcatgcaactaagacagctcttcccgggtg 120
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 338 catccacagttagaaccactttcctcccggtcatacaactaagacagctcttcccgggtg 279

                                                                       
Query: 121 catgacgtgacctacagaacaggaagcattcaggctcgctaaatttcacatgggttaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 catgacgtgacctacagaacaggaagcattcaggctcgctaaatttcacatgggttaaat 219

                             
Query: 181 ataagttttctgctgaca 198
           ||||||||||||||||||
Sbjct: 218 ataagttttctgctgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)