BAC Information

Click to search

BAC

Clone NameMSMg01-092F10
Chromosome1 (Build37)
Map Location 39,920,271 - 39,920,746
singlet/doubletsinglet
Overlap genenone
Upstream geneChst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065
Downstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092F10.T7 (MSMg01no092_f10.b1)MSMg01-092F10.TJ (MSMg01no092_f10.g1)
ACCAG310052AG310053
length695678
length of high quality
(start - end)
75 (57 - 131)476 (122 - 597)
definitionCHROMAT_FILE: MSMg01no092_f10.b1 PHD_FILE: MSMg01no092_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:10 2005CHROMAT_FILE: MSMg01no092_f10.g1 PHD_FILE: MSMg01no092_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCATA
GTCGCTCACTGCACTCCACTCCCTGTGTGGTGTACAAACACACAGGAAAT
GAATAAATCCGGGGTGGGGGGTGGGGGGTTTTTTCTTTCGTGTTGCCTAT
AGTCCTGGATTATCTTGGTTGTCTCTCCTCATATGGATTCGTCCCTGCTT
TCTTGTTATGTTCTCTATTTGTCCCCGCTGCGGGACTGTTTTGTCGCGTT
CACTGCACTCCCCAACTCCTCACCTCTCCCACTGACTCCCGCTCCCCTCT
TGTTCACCCTTTTTGCGCGCGCACTTCTCTTTGTTTGTTGCGGCTCTTCT
TTTTTCTCTCCCCTTCCTTCTCTTGTCTCTCGTTTCACTGCGTATTCTTT
TCTTCCCCCCCCGCCTTTACTTTCGCCTCATCTTTTGCTCTCCACTCCCC
CGTCTTCCCCCTCTCCCCCCTCCGCCTCCTCCCTTCCTTCCAACTCACCC
GGCCACCGTCCCCCGAACCCTGCGCCCTAATACTCCCCTCCAGCTTCCTC
TTTCTACTAGTCATCAATCACTTCTCGGTCTCTCAATATGTCAACCTGTT
CAATTTCCCTTTTTTATGTCCGCTAATTAGTTCTATTTATACAATCATTT
TTTATATCACAAAATCTTTCCCCCCTACATCCCTCACTATATATC
GAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCGAATTCAAGAGCTGTATATACCTG
AACAATCACCATCCTATTCCCAATACTCCAGTTACCCAGCAAGTTCCCTC
CTCCAGCCTCACACCCGACCACCAAGCCAGCCTCGATATCAGACACTGGA
TGCTACTTTGTTGCAGCGTGCTAGTGAGGACCCCACCTAGGCGAGGGTCT
TACCACTGCTCTTTCCAGCCAGGTGACTTTTTTTTTTTTTAATATGGACG
ACTTTCTCATACAGGAACCAGACCTGGAGTTCCAGCCTTTCCCAGGCTGT
AGGTCATGACGCCTACAAAGTCTTTATGTTTACTCCTTCTACAGGAAGAA
CACCTGCAGAACTTATACGCACCTCCTCATATTTGTAGAGCATCATGGTG
AACTTGGAGAGGGGATCTGCAAAGCTTTTGGAAATACTATTTTACACTTG
GGAACACGTGGGAGTTTCTACCGACTTCCATCTTGCCCACCCTACTTCCT
CCTAAGTAAGGTTACAGGAATAAGTAAGGCTGACTACAGTCTAATGCGCC
TGTATCTCCTGTTACTTCAGGCGCAGAGGCAGGAAGCTGGCTGAGGTGAA
GAGTTTAAGATCAGCATGAGAGGCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_f10.g1 MSMg01no092_f10.g1 CHROMAT_FILE:
MSMg01no092_f10.g1 PHD_FILE: MSMg01no092_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:10 2005
         (476 letters)



>mm_chr1_39920071_39920946
          Length = 876

 Score =  874 bits (452), Expect = 0.0
 Identities = 470/476 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatactccagttacccagcaagttccctcctccagcctcacacccgaccaccaagccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactccagttacccagcaagttccctcctccagcctcacacccgaccaccaagccagc 260

                                                                       
Query: 61  ctcgatatcagacactggatgctactttgttgcagcgtgctagtgaggaccccacctagg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ctcgatatcagacactggatgctactttgttgaagcgtgctagtgaggaccccacctagg 320

                                                                       
Query: 121 cgagggtcttaccactgctctttccagccaggtgactttttttttttttaatatggacga 180
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 321 cgagggtcttaccactgctctttccagccaggcgacttttttttttttaaatatggatga 380

                                                                       
Query: 181 ctttctcatacaggaaccagacctggagttccagcctttcccaggctgtaggtcatgacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ctttctcatacaggaaccagacctggagttccagcctttcccaggctgtaggtcatgaca 440

                                                                       
Query: 241 cctacaaagtctttatgtttactccttctacaggaagaacacctgcagaacttatacgca 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cctacaaagtctttatgtttactccttctacaggaagaacacctgcaggacttatacgca 500

                                                                       
Query: 301 cctcctcatatttgtagagcatcatggtgaacttggagaggggatctgcaaagcttttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcctcatatttgtagagcatcatggtgaacttggagaggggatctgcaaagcttttgg 560

                                                                       
Query: 361 aaatactattttacacttgggaacacgtgggagtttctaccgacttccatcttgcccacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatactattttacacttgggaacacgtgggagtttctaccgacttccatcttgcccacc 620

                                                                   
Query: 421 ctacttcctcctaagtaaggttacaggaataagtaaggctgactacagtctaatgc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacttcctcctaagtaaggttacaggaataagtaaggctgactacagtctaatgc 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)