NNNNCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCTTGAACGCCCAGGTTCAGGCATCATTATCTTTATAAGA
TGGTTATTTATAGAAAACACACTGGCAGAGTCTCCTTGTAATAAGGATAA
ATTATAGGCAACTTCCCCTGTATTTGCAGAGAATTAACATGCAATAAATG
CAAAGCTCTGATGTTAAGAGCTTGCTTACTACTCATGACATGCTGCACTT
CTGTGGAGTGCACACACGTAGACGGGAGGCTGAGCTATGTGCTGAAGGGT
AGGGGAAGTATCTCAGAGAACGATTTAGCTGCCCATCCTTTTAAGCCTCA
GGCAGAGACTGTTGACAGGTTTATAGACCAAAGTATTCATACCAATGGTT
TATTATATTAAATCTCACACCCACATTTGAAAAGTATTTAAATTCACCCA
AATGCTAAGCTCAAAGTGGGTGGCATCACTGTCCTTTTTCTATGCACAGC
CTAGCACAAATGGACTAGTGTGTGTGGGGTGGGTGTTCCTTTCATCTTTT
TTNTTGTTTCCCCTCCTCTCTTTTTATTTCCCTCTTTTTCTAATTACACT
CCCCTGCTCCCCCCCATCACCCTTCTCCCCTCTCCTCTTCCACCCTCCTC
TTTTTCCTTCTTCTTTCTCTCTTCTCTCCTCCCCCTTCTCCTTTTTT

GTCCAGTGTCTCTGGTTTTAAATTTTTTTGTGTTGTTTTCCCCCCCATCC
GATATTTTCCAAAAATTTTTCCTTTTTATAATTGGTGTTTTAAGAGGCAC
ANNNTAAAAAAACCCNNAAAAAGTTTTTATCCCACAAAGAGGGGGGGGGG
GAAAGGNGAACAGTCCGCACCCCATACTTCCTCCCGGCTTATTTTGTTCT
CTGTTTTTGTTTTTCCTTCTGTGTTCCGGCGGGGCGGGGGGGGTGGGCGG
GGGTGGCGGGGCTTTTCTGGTGGTTTCCTCCTGGGTGCGGGGTGGGTGGT
GCGGAGCGTCGGCGCGCGGCGAGGCGTTGCCCGTTTTTTTTGCCGTGTTT
TTTTTTTTCCCCTGTTCTGTCTGGTTTTCGTGCCACCACCATTTTTACTA
TTTTCACCCCCCCCCCCTCCTTTTTTTCACTTTTTTGTGTTGATTTCTTC
CTGTTTTTTTCTTTTAATAAAATAATAAAATCCTTGTGGGTTTTGCCCGG
GGCGGATCCTCTTTCTTTCTTTCTTTTTCCATCCCCCTCTTTTTATGTTT
TTTTCTGCGTGAGTGCGGCGTGTTTTCTTTTGGGTTGGCCTTTTTTTGCC
GCTTTTTTTTTCGTGCTTTGTTTGTGTTTTGGCGGTCCGTCATTGTTGTG
GTCTGCTTTACGCGTGTTCGTGCCCTGCTTGTCGCTTGTGCTGTTTGGGG
CGGGCGTGTCGCTTTTGTTTGGTTAGGTGGTGTTGTTTGTTGTGAGGCGT
GTTAGTGGGGATGGTGTGACGGGTGGCTGTGCGTGCGGGCGTGGTGCGCT
GCC

Query= MSMg01no092_f21.b1 MSMg01no092_f21.b1 CHROMAT_FILE:
MSMg01no092_f21.b1 PHD_FILE: MSMg01no092_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:12 2005
         (479 letters)



>mm_chr1_178865816_178866695
          Length = 880

 Score =  814 bits (421), Expect = 0.0
 Identities = 463/477 (97%), Gaps = 3/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcttgaacg-cccaggttcaggcatcattatctttataagatggttatttata 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattcctcttgaaagtcccaggttcaggcatcattatctttataagatggttatttata 621

                                                                       
Query: 64  gaaaacacactggcagagtctccttgtaataaggataaattataggcaacttcccctgta 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaaacacactggtagagtctccttgtaataaggataaattataggcaacttcccctgta 561

                                                                       
Query: 124 tttgcagagaattaacatgcaataaatgcaaagctctga-tgttaagagcttgcttacta 182
           ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 560 tttgcagagaattaacatgcagtaaatgcaaagctctgattg-taagagcttgcttacta 502

                                                                       
Query: 183 ctcatgacatgctgcacttctgtggagtgcacacacgtagacgggaggctgagctatgtg 242
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ctcatggcatgctgcacttctgtggagtgcacacacgtaggcgggaggctgagctatgtg 442

                                                                       
Query: 243 ctgaagggtaggggaagtatctcagagaacgatttagctgcccatccttttaagcctcag 302
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ctgaagggtaggggaagtatctcagagaacgatttagctgtccatccttttaagcctcag 382

                                                                       
Query: 303 gcagagactgttgacaggtttatagaccaaagtattcataccaatggtttattatattaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagagactgttgacaggtttatagaccaaagtattcataccaatggtttattatattaa 322

                                                                       
Query: 363 atctcacacccacatttgaaaagtatttaaattcacccaaatgctaagctcaaagtgggt 422
           |||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctcagaatcagatttgaaaagtatttaaattcacccaaatgctaagctcaaagtgggt 262

                                                                    
Query: 423 ggcatcactgtcctttttctatgcacagcctagcacaaatggactagtgtgtgtggg 479
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ggcatcactgtcctttttctatgctcagcctagcacaaatggactagtgtgtgtggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space:   408030
Effective search space used:   408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)