BAC Information

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BAC

Clone NameMSMg01-092H20
Chromosome1 (Build37)
Map Location 54,742,206 - 54,821,883
singlet/doubletdoublet
Overlap geneAnkrd44
Upstream geneLOC100042162, Dnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
Downstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092H20.T7 (MSMg01no092_h20.b1)MSMg01-092H20.TJ (MSMg01no092_h20.g1)
ACCAG310166AG310167
length674683
length of high quality
(start - end)
286 (115 - 400)506 (75 - 580)
definitionCHROMAT_FILE: MSMg01no092_h20.b1 PHD_FILE: MSMg01no092_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:22 2005CHROMAT_FILE: MSMg01no092_h20.g1 PHD_FILE: MSMg01no092_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,821,598 - 54,821,883)(54,742,206 - 54,742,709)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATA
CTTACCGACGCCAAGAATCTTTAAATTTTGTACGAATTAACTCTGTGTAG
GAAAATATCTCACACTGATCCTCCTTCCCCTCAAGTGCTGGAATTCCAGG
TGTGTGCCTCCGTGCCTGCTCCTTCTTTCGTTCTTGAATAGCACAGACCT
TTGAGTAGGCTAAAACCAATTACATCTTCGCATACAATGTACATGGAATG
ACTCACAGAACCCGTGAGGGTCTAGCTTATGCTTTGCTAATGTGTGGTTA
AAATATTTTTATGACCCAAAGAAGTCAAATCATTATTGCTCATGCCATCA
GGTTATAAATAGGGTGACTTACAATCCTTAGGAGACAGGGGATAAAAGCT
GGGACACGTAGCTTGAGTCGGCACCACGTAACTGAAAATATTTTTCTATA
TAAAAGATTTTGTACATAAAGAATTACATTTTGATAAAGCAAGCTATACC
TCTTCCCCCCACCCCCTCAGCCTCCCATACAAACCGTATGTCTTGTAACC
AGTATTTGTCTCCTGCCCTTTCAGTAGCTGCAGCATTTATAGCAGTGAAC
TTAAGCTTTAAACGATCTTCAATTATTAAATAATGGCCAAACACATTGTG
CCATAGTGAACTAGGTAACAGATC
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACCCTAGAAATGGGGAGCCAGTTAT
ATTTCCACTGTGGAATTTCTAAATCATGTCTTAGGTTGGAAAGAACCAAT
ATTCTCAAATTAAGGAAAAAGCAACAGAAGCAAAGGGAAGCAGAAGTCTC
ATTCGTTCCTTTGTAAGCAGAATCCATTCAATAATTATTTGTTGAGGATT
GTGCTAGGCTCTGAGATCACAGCTCTGATCAAAGACTCTACCCATACAGC
ACTAAGGATCTAGAAAGTAGAATATACATGCTTCATTGGTTGAACGTCAG
AGAGTGTGGGATGATTACAATCAGGGATGACATCCAGCTTACCAGCGTTG
GTGATAGAAGAGCTGGTAACAGAAGAAAGACCAAGGAAGGTCATAGAAGA
GACCTGTGCAGTGAACTAGGGTTTGAATAATAGTGAGGCTATTCAGTGGG
ATATGTTTAATTTAATGCAGTGTTTCTCACCCCTCCTAGTGCTGAGACCC
TTTAAGACAGCCCCTCATGTTGTGGTGATGCTCACTAGAAAATTACTTTT
GTTGCTACTTCATAACTGCAATGTTGCTACTGTTATGAACTGTAATGAGG
ATATCTGTGTTCTCTAGTGGACTTAGGAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_h20.b1 MSMg01no092_h20.b1 CHROMAT_FILE:
MSMg01no092_h20.b1 PHD_FILE: MSMg01no092_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:22 2005
         (286 letters)



>mm_chr1_54821344_54822029
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatcctccttcccctcaagtgctggaattccaggtgtgtgcctccgtgcctgctcctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 540 ctgatcctccttcccctcaagtgctggaattccaggtgtgtgcctccgtgcccgctcctt 481

                                                                       
Query: 61  ctttcgttcttgaatagcacagacctttgagtaggctaaaaccaattacatcttcgcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctttcgttcttgaatagcacagacctttgagtaggctaaaaccaattacatcttcgcata 421

                                                                       
Query: 121 caatgtacatggaatgactcacagaacccgtgagggtctagcttatgctttgctaatgtg 180
           ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct: 420 caatgtacatggaatgactcaaagaacctgtgagggtctagcttatgctttgctgatgtg 361

                                                                       
Query: 181 tggttaaaatatttttatgacccaaagaagtcaaatcattattgctcatgccatcaggtt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tggttaaaatatttttatgacgcaaagaagtcaaatcattattgctcatgccatcaggtt 301

                                                         
Query: 241 ataaatagggtgacttacaatccttaggagacaggggataaaagct 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ataaatagggtgacttacaatccttaggagacaggggataaaagct 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no092_h20.g1 MSMg01no092_h20.g1 CHROMAT_FILE:
MSMg01no092_h20.g1 PHD_FILE: MSMg01no092_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:22 2005
         (506 letters)



>mm_chr1_54742006_54742911
          Length = 906

 Score =  890 bits (460), Expect = 0.0
 Identities = 493/504 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccctagaaatggggagccagttatatttccactgtggaatttctaaatcatgtcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 aaccctagaaatggggagccagttatatttccactgtggaatttctaaatcatgtcttaa 260

                                                                       
Query: 61  gttggaaagaaccaatattctcaaattaaggaaaaagcaacagaagcaaagggaagcaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gttggaaagaaccaatattctcaaattaaggaaaaagcaacagaagcaaaaggaagcaga 320

                                                                       
Query: 121 agtctcattcgttcctttgtaagcagaatccattcaataattatttgttgaggattgtgc 180
           ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctcagtcgttccttcgtgagcagaatccattcaataattatttgttgaggattgtgc 380

                                                                       
Query: 181 taggctctgagatcacagctctgatcaaagactctacccatacagcactaaggatctaga 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 taggctctgagatcacagctctgatcaaagactctacccatgcagcactaaggatctaga 440

                                                                       
Query: 241 aagtagaatatacatgcttcattggttgaacgtcagagagtgtgggatgattacaatcag 300
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 441 aagtagaatatacatgcttcattggttgaacgtcagagagcgtgagatgattacaatcag 500

                                                                       
Query: 301 ggatgacatccagcttaccagcgttggtgatagaagagctggtaacagaagaaagaccaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ggatgacatccagcttaccagcgttggtgatagaagagctggtaacagaagaaagaacaa 560

                                                                       
Query: 361 ggaaggtcatagaagagacctgtgcagtgaactagggtttgaataatagtgaggctattc 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaggtcatagaagagacctgtgcagtgaactagggtttgaataatagtgaggctattc 620

                                                                       
Query: 421 agtgggatatgtttaatttaatgcagtgtttctcacccctcctagtgctgagacccttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgggatatgtttaatttaatgcagtgtttctcacccctcctagtgctgagacccttta 680

                                   
Query: 481 agacagcccctcatgttgtggtga 504
           | ||||||||||||||||||||||
Sbjct: 681 atacagcccctcatgttgtggtga 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)