BAC Information

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BAC

Clone NameMSMg01-092L11
Chromosome1 (Build37)
Map Location 24,893,055 - 24,893,238
singlet/doubletsinglet
Overlap genenone
Upstream geneSmap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092L11.T7 (MSMg01no092_l11.b1)MSMg01-092L11.TJ (MSMg01no092_l11.g1)
ACCAG310337AG310338
length713724
length of high quality
(start - end)
184 (134 - 317)86 (127 - 212)
definitionCHROMAT_FILE: MSMg01no092_l11.b1 PHD_FILE: MSMg01no092_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:40 2005CHROMAT_FILE: MSMg01no092_l11.g1 PHD_FILE: MSMg01no092_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCCTTTTCCAGAAAAAGAGCACCGTGATGTCTGTCTTCAT
CAAACCAATTTATATAAGTTTTTAACCTAAACCAATCTCAGGAAAAAGAA
ATGATCTGGAACCTCTAAAGAAAGGTCCAGAGCTTGTTGGACATATTTTA
CAATCATCTACAATATTTCATCTAGATTAATCAGAGAAATTTCTGGCTTC
ACTGTCAAACCGTCAACAGATTTTAATTTTACCTTTAAATATCAGAATGT
TTTATTTATTTACAGCATCTCTTTTTAGATAGGGAGGAAAGTCTGGTCTA
CCTCATCTTTTCTTATTGTTACCTCAGCTCCATTGCAGTGTACCTAGAAA
TGCTGAGTTGATCAATGTCGTACCCTGACATAACATATGTCTCCATGTCC
TGATCTGTAGACGTGATGCTTTAAGCTCTCTCTCTTCCTGTATTATACTG
ACCAATGCATAGCTTGTTTCCTAATTTTATGTTCTGCACTCCTCCCTTGT
ATGGTTGACTTTCATTTCCTTAAGGTTCCGGCCCTCACTGTCTGCCCATG
GAGTTACATCAATTGCTGTTCCTTGTCCCTGTCCTCAATACTTCCTATTC
CTCCTATCCCACATCCATGATCTCTAACTTCAACGTTTTCTTTCCGCACT
TTGTCGTCCTTTG
AATGCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACACACCCTAGCTTAGGGGTGTGGAAT
TCAGCATAGCTCCTTTAACCCCCTAACTTCCGAGCCTCTTGGCCGACATC
TGTTATCTCCTGTGTGGTATGCATGTCAGTCCAGAGCTCGTTCATTAAAC
TACCTCGTGTAATTCCATCAAGATGGTCCTTCGTGATTCTTTGGGTGCCC
GCCGAATTGGGAATTGAGTGGGGGTTTCCCCACTATGTTCTATCAATGTC
ACAGCAAGTGATCATGCTGGTTAATGATTACTGTTCTGGACAATCACAAA
AAAATGTTTTTTTAATTACACTCCCTTTCTTAGCTATAAAGACAGAGGTT
CCTGATAATGCCTTACGTCATAGTGAAGATTATTAATAGGCTCCGCTGTG
CGAGTCCGTCAAACAGACATTGTGTTCATTCATTGTATCTTCCTTGTTAT
TTTTTTACTGTTTCTACTCTTCCTCCCTAACAATAGCTATACCCCTCCTT
TGCTCAACCTGTACTTTTTATTTTTTTCCCGCATTGTCTAAAATCCTTTC
TTTTCTTTCCTCAACTGTCCTATCTCTCTTATATTTTTCACCCCTTTATC
TAACCAACATGGTTGACTTACATTTCTATTTTGTCTCCTATTCCATTCTG
CAGAATGGTATTTTCTGATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_l11.b1 MSMg01no092_l11.b1 CHROMAT_FILE:
MSMg01no092_l11.b1 PHD_FILE: MSMg01no092_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:40 2005
         (184 letters)



>mm_chr1_24892855_24893438
          Length = 584

 Score =  325 bits (168), Expect = 1e-93
 Identities = 180/184 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctcaggaaaaagaaatgatctggaacctctaaagaaaggtccagagcttgttggaca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatctcaggaaaaagaaattatctggaacctctaaagaaaggtccagagcttgttggaca 325

                                                                       
Query: 61  tattttacaatcatctacaatatttcatctagattaatcagagaaatttctggcttcact 120
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 tatcttacaatcatctacaatatttaatctagattaatcagagaaatttctggcttcact 265

                                                                       
Query: 121 gtcaaaccgtcaacagattttaattttacctttaaatatcagaatgttttatttatttac 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtcaaaccatcaacagattttaattttacctttaaatatcagaatgttttatttatttac 205

               
Query: 181 agca 184
           ||||
Sbjct: 204 agca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)