Query= MSMg01no092_n20.b1 MSMg01no092_n20.b1 CHROMAT_FILE:
MSMg01no092_n20.b1 PHD_FILE: MSMg01no092_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:52 2005
(620 letters)
>mm_chr1_196237751_196238772
Length = 1022
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%), Gaps = 2/618 (0%)
Strand = Plus / Plus
Query: 5 gaattccacttgtgcctga-aggattccaa-gaccacaccatcaacagttgggctgtgtg 62
|||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattccacttgtgggtgacaggattccaaagaccacaccatcaacagttgggctgtgtg 264
Query: 63 ttctacatccattttacctgagggcaaaggatattttcacttgttctcaccacagcttct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctacatccattttacctgagggcaaaggatattttcacttgttctcaccacagcttct 324
Query: 123 gtaaaacgctttgccaaaataaccaaattacagattttggaaagccacaggagagggtac 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtagaacgctttgccaaaataaccaaattacagattttggaaagccacaggagagggtac 384
Query: 183 agacaccagctgtggaggcccctgcctgcctggccacactccctcctgtctaagtgagaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacaccagctgtggaggcccctgcctgcctggccacactccctcctgtctaagtgagaa 444
Query: 243 gtttggcagcaggacctcttctcaccaatggattggaggaaatgagctcagcaagtttca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttggcagcaggacctcttctcaccaatggattggaggaaatgagctcagcaagtttca 504
Query: 303 aacctgagaatcagcagttttgaacattagactaaaatgtggccgggattcaaccctgtg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacctgagaatcagcagttttgaacattagactaaaatgtggccgggattcaaccctgtg 564
Query: 363 tccctcaaggaggagccagcagaacctacatctgacccttaactggaggagagaaagaca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccctcaaggaggagccagcagaacctacatctgacccttaactggaggagagaaagaca 624
Query: 423 aaactgaaataatgggtaccacagataactgtttatttttttcccagcacaagcaaataa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaactgaaataatgggtaccacagataactgtttatttttttcccagcacaagcaaataa 684
Query: 483 accacattggagcctccaaacttcatagagggtaatattcctttaatggaatgcttttag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accacattggagcctccaaacttcatagagggtaatattcctttaatggaatgcttttag 744
Query: 543 agaagagtcataaaaataaattgaaaagtgctttctgctggctacagctggcataaacag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaagagtcataaaaataaattgaaaagtgctttctgctggctacagctggcataaacag 804
Query: 603 catctgagcaaacaggat 620
||||||||||||||||||
Sbjct: 805 catctgagcaaacaggat 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_n20.g1 MSMg01no092_n20.g1 CHROMAT_FILE:
MSMg01no092_n20.g1 PHD_FILE: MSMg01no092_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:52 2005
(602 letters)
>mm_chr1_196271409_196272410
Length = 1002
Score = 843 bits (436), Expect = 0.0
Identities = 485/520 (93%), Gaps = 30/520 (5%)
Strand = Plus / Minus
Query: 1 catacccacacctgggtaggtatctactaa------cctcaacaattcaccactttctct 54
||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 496 catacccacacctgggtaggtatctaccaaccctttcctcaacaattcaccactttatct 437
Query: 55 ctttccctctgccattgcttcctctttccctttctcttcatgcttgaatctgttaaaaca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctttccctctgccattgcttcctctttccctttctcttcatgcttgaatctgttaaaaca 377
Query: 115 ttttgtctcaaaacaaaactacatggggttctcagatcatgccaccaatgtgtctatagt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttttgtctcaaaacaaaactacatggggttctcagatcatgccaccaatgtgtctatagt 317
Query: 175 gggaaaggaaacacaagatacaaacagaaccagaaaatctagaatgagtcttttccagag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gggaaaggaaacacaagatacaaacagaaccagaaaatctagaatgagtcttttccagag 257
Query: 235 tgtaaaatatgaaataattctagtctttagaaaaatgcctatcaacttctgggtttactc 294
||||||||||||||||||||||| |||||||||||||
Sbjct: 256 tgtaaaatatgaaataattctag------------------------tctgggtttactc 221
Query: 295 tctggtctatatctaagtgaaacaaaatatatttacacaaaaacttctgttattattatt 354
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 220 tctggtctatatctaagtgaaacaaaatatatttgcacagaaacttctgttattattatt 161
Query: 355 atttttcttttttattagatattttctttatttacattccaaatgttatcccctttccta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 atttttcttttttattagatattttctttatttacattccaaatgttatcccctttccta 101
Query: 415 gtttgccctccaaaaatcccctatctcctccaccctccccctgctccccaacccacccac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 100 gtttgccctccaaaaatcccctatctcctccaccctccccctgctccccaacctacccac 41
Query: 475 tcccattcctggtcctggcattcccctatactggggcata 514
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 tcccattcctggtcctggcattcccctatactggggcata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
