BAC Information

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BAC

Clone NameMSMg01-093A11
Chromosome1 (Build37)
Map Location 68,686,104 - 68,686,432
singlet/doubletsinglet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093A11.T7 (MSMg01no093_a11.b1)MSMg01-093A11.TJ (MSMg01no093_a11.g1)
ACCAG310575AG310576
length1,2721,259
length of high quality
(start - end)
331 (114 - 444)373 (84 - 456)
definitionCHROMAT_FILE: MSMg01no093_a11.b1 PHD_FILE: MSMg01no093_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:07 2005CHROMAT_FILE: MSMg01no093_a11.g1 PHD_FILE: MSMg01no093_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTCTATGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCT
TAGTAAAGATTTTTCCCTTATAGACTTTCTCTTTGTTGGTCAGAGAACCT
TTTAACTCTATGAAATCACACTTGTCATTTCTTGTGATTACTTCCTGAAT
TCATGGGATTTTATTCAGTACATTTCTGCTTATTTCTCAACATGCTGAAG
TATTTTCTCTTCATCTCTTTACCAGTTGCAAATTTTCACATCTTATGTCA
ATGTCTTTAATCCATTTTGGCAATGTATTCTTGCCATTAGCATGTTGTGT
TTGTCCTTGGTTTGAGTCTACATAATTCCAATTTTCTCCTTATGTACACC
TGGCTTTCTTCCCAAATACTGAAAAATATGTGTTTTTCTCATGCATTGAA
TCATTCTTTGGAGATTTAAGGTTTTTCCCCTAGTTAATTGAGCGTGATTT
CTCCTCCCCCTTCTTTATTTAAAATAGCTTGACTTCAACCCCTAAATAAT
ATAATGAAGAAGTGCTTCTCTGGGATTGTGAAACCCCAGAAGGGAAATAA
CAAAAAGAAAAGAATACAACAGAATAGAATAGAACAGAAAAGAATACAAT
AGATTACAATAGATAAGACTACCTTAGACTAGTACACACAAGACAAGACT
AGCCAAGCACTAGACAAGACAAGACAACACACGACCTGTCAATAGTGTCA
TTGACAGGCGTGTAAGCTGTGACTCCTTTTGAAGACATGGAAGACCAACA
CTATACGCTCAGTTCACTTGATAAAATGCTTCCTGAACCTGTTTCCCTTT
TTTATTCTATTTTACACTGTTCTTCATCGTCCACCTCTTTCTTTTCTTTC
ACTCTCATGAACTCTATCATTACTCTTATTGCTAATACATATTATTTCTT
CCTTGCTACTAATAAATTATTATTTTGCCATCCCATTTAAATGAAAAATT
AATGTTTTTTTCNTATTCTCAATCCTCTCTATGGTATTCTGTGTTTAATT
TCCTACTTCTGAATTTTATTGAATCCCTTTATTTTTTTTTTTACTTTTAC
CTTTTCTAATCTGTGTATTTTTTTTTCTATTTAACCTCTTTTATATTCTT
ATACTTTAATTTGTTTTCTTTTTTCTAATTCTTTATTAATTATTTTTTTC
TAAATATATTCNTATCTGTCTTTCTTTATTTCCTTACTCACTTATATTTA
TCTTCTCTTCTCCTCTTTTCTTACTCTTTATTCGTTCACTTTATTATCTT
TAATACTTCTCTTTTCTCTTTG
CTCTATTNTNNNAAACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTTAAACTGAGGAATACCGAATGGC
AGAGAAGCATTTGCCCTTATGATCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCCCAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGATTTATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGTATTGAACCCCCACGCCCCTCAACAGAGGAATGGATACAAAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCCTCCTGA
GTGAGGTAACACATTCACAAAGAACCTCACACAATATGTATTCACTGATA
TTTGGATATTAGCCCCAAACCTTAGGATACCCAAGATATAAGATCTACTT
TGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGTCACTA
TGCCCCCTCCTTAGCATTGGCAACCAAACATCCTTGCTAGGAGTTACCGA
GACCAATTTTGGAGCTGAAATGAAAGGATGGACCATGTTAGAGACTGCCC
TATCCAGGGACTCCACTCCTTAATCATTTTCCCAAACGTTGACTCCTCTG
CTTACCCTAATTATGATTTTTTTTGAAAAGCACCCATATGTATCTTGTCT
TCTGTCAAAACTATGCTGGGCGCCTATTAAATATTAATAATGGGATGGCT
TACAGTCCTACTAATGGTATGGTATTCTAGGTCTCCTCCATGGTAGGAAT
TTATGATAAAAGTATTCTAAGGTATTTTTATCGGTTATTTGCAATCCCTT
ATAGGTGTGTAAAAATCTATTTTAAACTAATCCGGTTCCTCCGGTAGTTC
TTTGTATTCCTCTGTTGTTCTTATTAATTATTAATATATGTCTTTTCTTG
TCCCCTATCTCGTGAAAACAAAGGAGCCTCTTGGTATCCTTTCTAAAATT
CTAAATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_a11.b1 MSMg01no093_a11.b1 CHROMAT_FILE:
MSMg01no093_a11.b1 PHD_FILE: MSMg01no093_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:07 2005
         (331 letters)



>mm_chr1_68685904_68686634
          Length = 731

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcacacttgtcatttcttgtgattacttcctgaattcatgggattttattcagtacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aatcacacttgtcatttcttgtgattacttcctgaattcatgggattttattcagtacat 470

                                                                       
Query: 61  ttctgcttatttctcaacatgctgaagtattttctcttcatctctttaccagttgcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttctgcttatttctcaacatgctgaagtattttctcttcatctctttaccagttgcaaat 410

                                                                       
Query: 121 tttcacatcttatgtcaatgtctttaatccattttggcaatgtattcttgccattagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttcacatcttatgtcaatgtctttaatccattttggcaatgtattcttgccattagcat 350

                                                                       
Query: 181 gttgtgtttgtccttggtttgagtctacataattccaattttctccttatgtacacctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gttgtgtttgtccttggtttgagtctacataattccaattttctccttatgtacacctgg 290

                                                                       
Query: 241 ctttcttcccaaatactgaaaaatatgtgtttttctcatgcattgaatcattctttggag 300
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 289 ctttcttcccaaatactgaaaaatatgtgtttttctcatgtaatgaatcattctttggag 230

                                        
Query: 301 atttaaggtttttcccctagttaattgag 329
           |||||||||||||||||||||||||||||
Sbjct: 229 atttaaggtttttcccctagttaattgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)