BAC Information

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BAC

Clone NameMSMg01-093O10
Chromosome1 (Build37)
Map Location 114,504,942 - 114,505,214
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093O10.T7 (MSMg01no093_o10.b1)MSMg01-093O10.TJ (MSMg01no093_o10.g1)
ACCAG311219AG311220
length1,0711,279
length of high quality
(start - end)
274 (19 - 292)316 (81 - 396)
definitionCHROMAT_FILE: MSMg01no093_o10.b1 PHD_FILE: MSMg01no093_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:12 2005CHROMAT_FILE: MSMg01no093_o10.g1 PHD_FILE: MSMg01no093_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTAAAGAACACCCCATAAAAAGAGGGGGAAATAAATATAGCACAAA
TAGTAATTGATGAATGACTCAAATTACAACCAGAAATATTGAATCTAATT
GAGGAAAATTCTATAAGACCTAAACAAGAACTTTCTGAATAGAACACAAT
AGCACAGAAAATAATATCAAGAGCAGTGTTAGGAAATGAAGATGTTTCCA
AAGAACTTCTTATCTTAAAACTCAACTATAAGTAAAAAACATTTTCTCAT
TGTATCTCTGATGTTAGTAGTTAAATCATTGTTGACCAAGGTTTTTTTAG
TTATTGTGGGACCAAGTAAATAAGATTGATAAAGTAGTTACTAATGGTCT
TACCCCCCTATTCTGTATTCAGTTACTTGAACCATTCATGGCCCATGACT
AATGATGGAGGTTGAAACATGACTGTGTTGTCTTGCTGCACATTGTTATC
TATATTCTTCCTCTGTGTGAATATCCCTCCTCTCTCTGATTTCTGATTTT
CATCTACCATTTCCCTGTGTTTCTCCCCTCAGTATCCTTTTTACAATTGT
TGTTCCTTAATTTCTTCTTTTCTTATTTGCTCTCTTCTTGTTTTCTTCTT
TTTTTAACTTCTATATCTTTCTTTTTTATCTTTATTCCTTATATCTTTTC
CATTCACCTCCTTCTATTCTTTTTTCTTTTTTTTCCTCTTTTTTATTCCT
TTTTACTTTTCTTTCTTTCTTTTTTTTATTTTTTCCTTTCTTTACTAATT
ACCTCTCTCTTTCTTTTTTGCCCCTTATCTTCATCTCTCATTTTCTCCCC
TTTTTCTCTCTTTTTTTTTTTCTTCTTCTTTTTCTTTTTTCCCTTCTTCC
CTTTTTTTCTTTTTTTTCTTTTTCTTTTTTATTTTTTTTTTCTTCCTCTT
TCTTCTTTTTCTTTTATTTTTTTTTTCTTTCCCCTTCCTTATATATCTCT
TTTTCTTCTTCCTTCTTCTTTTTTTTTTCTTTTCCTTTTCTTTTCTTTTC
TTTCCATTCTTTCACTCTTTTTCGTTTTCTTTTCTTTCTTTTCTCTTTTT
TTTTACTTCTTTCTTTTTTTG
TATTNTCCAGATGGTAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACCTTTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGACCAAATGTTCAACATCCTTAATCATCAAGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGGGGGATTGCAGGCTTGAACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGCAGGATCC
AGCAATACCTCTGCTGGGCATATATCCAGAAGATGCCCCAACGGGTAAGA
AGTATTTATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGGCAGA
ATCTGGAAAGCACCCACCATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACCTCTACACCATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGCAGGGTCTCATCCTGAG
CGACGTAACACATTCACAAAGGATCTCACTCAATATGCACTCACTGACTA
ATGGACATTAGCCCATAATCTAGGACACCCTAGATATAATATCACATTTC
CCACTTACCTGAAACTCATGAAAAATCATTCCTGATGTGTGTACTCTACG
CCCCTCCTTAACCGTGGTAACACAATCCCCTTTGGAAGGATTTTCTGATA
ATAAGTCTTGCTTCTTCACATTATTGTTTGTATCCTTGTTTAATATCTGT
CTTTTCTATCTTTTCTACCCTCTTATATCTCTTTTCCTAACGTCTTGAAT
CCTATTTGTCTCGCCTTACTTATTTATTTTTATTCTTTAATGAATTTCAT
AAGTTATTCTTTTCCTCTTTTCTTCATATCTACCCCCTTATTCTTTTTAT
CTAACTCTCTAATTGGTCTAGGTCCTCCTTCTATTCTTTTCATTTCATAA
GCTTCTTCTTTGCTCCTTCTTCCTTTGTTTTCTATTATTCTATTCTCATA
TCTCCCCTTCTGTTGATCTTATTTCTTCTTTTGTTTATATCTTCTTCATC
TTTTNCTAATATCCCACTCTATATTTCATCCTTTTCTTATCTANTCCTCT
TATNTCAGCTTATTTACTAACTCCTCATCTTATCTCTTCTTTACTCTATT
CTCTATATATTCTTCCTCCTCCCTCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_o10.b1 MSMg01no093_o10.b1 CHROMAT_FILE:
MSMg01no093_o10.b1 PHD_FILE: MSMg01no093_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:12 2005
         (274 letters)



>mm_chr1_114504742_114505415
          Length = 674

 Score =  482 bits (249), Expect = e-140
 Identities = 267/273 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaaagagggggaaataaatatagcacaaatagtaattgatgaatgactcaaattaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ataaaaagagggggaaataaatatagcacaaatagtaattgatgaatgactcaaattaaa 260

                                                                       
Query: 61  accagaaatattgaatctaattgaggaaaattctataagacctaaacaagaactttctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagaaatattgaatctaattgaggaaaattctataagacctaaacaagaactttctga 320

                                                                       
Query: 121 atagaacacaatagcacagaaaataatatcaagagcagtgttaggaaatgaagatgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaacacaatagcacagaaaataatatcaagagcagtgttaggaaatgaagatgtttc 380

                                                                       
Query: 181 caaagaacttcttatcttaaaactcaactataagtaaaaaacattttctcattgtatctc 240
            |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 381 aaaagaaattcttatcttaaaactcaactataagtaaaaaatattttctaattgtatttc 440

                                            
Query: 241 tgatgttagtagttaaatcattgttgaccaagg 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgttagtagttaaatcattgttgaccaagg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)