BAC Information

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BAC

Clone NameMSMg01-094C14
Chromosome1 (Build37)
Map Location 162,546,892 - 162,547,420
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094C14.T7 (MSMg01no094_c14.b1)MSMg01-094C14.TJ (MSMg01no094_c14.g1)
ACCAG311409AG311410
length874701
length of high quality
(start - end)		---528 (79 - 606)
definitionCHROMAT_FILE: MSMg01no094_c14.b1 PHD_FILE: MSMg01no094_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:41 2005CHROMAT_FILE: MSMg01no094_c14.g1 PHD_FILE: MSMg01no094_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTGGGGGCNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGTT
AAACGACCTAGANCTCTAGAAANNCNCTCCAGGAAANNTTTCGGCCTCTC
CCAAAAAAAAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCNNCNNNNCNCNNTCTTCNNNNNNNNNNNNNNNCNN
NNNNNNNCNNNNNNNNNNNNNNNNNNNNTTCCCCCTCCTCTTCCAAAAAC
GGGGGANGNNCCCCCAACAAAAAANAAACCTCCCCCCCAANNNNNAANNN
CNNNCCCCCNACATNCAAAAAAACCNNNCNNTTTTTTTCCCCCCCCAAAA
NAAAAAAAAAAACACCCCNCAANCCACCCCCTCCCCCCTCCNNNNCCCTT
NNNCCTCCCCCCCCTCNNCNTCNNNCCATNNANANATTCTTACCCCTCCC
CCCTCTCCCCCCCCCACCCCCCCAATTAAAAACCCAACCCCCCCCTCCTT
CCNCCACCCCCCNNCTTAGCAANAATACCTNCNTCACCAAACCCNNNNTA
CCCNCNTTNAANCTTAAAAAGGTGGGGTTTTTTGTTTATGACGNNTTAAA
CCGTAACAAAACCNNNNCCCCCCCNCTTCTTATNCCCCCCCATTTCCCTC
TCGGGGGGGGGGGTCCCGCAACANAGCNNNCCCTCCCCCTCTCTTNNATT
ACCAATTTTTTTTTTTTTTCGCCGGGCCCGCCCGCCNTCCNNCCCCCCCT
TCACATCTTCTCACAACCCCCCACAAATTTTTCCTACATGCGGGGTAGTT
TAGGTTTGTNNGAACCTTNNNNNG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAATCAGGATGAAATCTT
AATTGCTGGAATGAGAAGCCACTGAGTAATAGTCACGTTTTCACATAGTC
TGAGCCATTTGTTGTGGGGGAGGCTGTGTATATTTTAGGACAATTTGAAT
GTTATATCTTCTTGCAGGATTGTATATGCAGCTTCTATAATTATATGACA
TGTATGATACAGTTGATCAAATCTTCTAATTCGTTTTTAATAACAAATAC
TAGGTTGTAAGTTTCTGCTTTTATAGATCGGATCAGTACATTAAAACCAC
AGCATAGCTAATCGATACTCTTTCAGAAATGACATAGTCATTAGCTTTTT
TCCTACTACTTGAATTCTTGTTTTTTTTTTTTTACCCGTAGATGAATATT
TTGCTCTAAAAGTACATATACATAAATATACAAGTAATGTTTCTGTTCAA
AGAATTTGTTTTATGACTCTGAGTCACTCATCTCTTTGGAAGAGAGTTTT
GATCTTATGAGCCTCTGGTATTTATAGATTAGGCATGGTCATAGCTGCTG
CTGGGATTATGCAAATTAAAATGATGAAATGCTTATCATATAGTAAGTAC
TCAAGATTCATCTCTGTATCCACATGCATAAAGCAGAGATGATTGCTGGT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_c14.g1 MSMg01no094_c14.g1 CHROMAT_FILE:
MSMg01no094_c14.g1 PHD_FILE: MSMg01no094_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:41 2005
         (528 letters)



>mm_chr1_162546692_162547620
          Length = 929

 Score = 1007 bits (521), Expect = 0.0
 Identities = 527/529 (99%), Gaps = 1/529 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaatcaggatgaaatcttaattgctggaatgagaagccactgagtaatagtcacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tctggaatcaggatgaaatcttaattgctggaatgagaagccactgagtaatagtcacgt 670

                                                                       
Query: 61  tttcacatagtctgagccatttgttgtgggggaggctgtgtatattttaggacaatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tttcacatagtctgagccatttgttgtgggggaggctgtgtatattttaggacaatttga 610

                                                                       
Query: 121 atgttatatcttcttgcaggattgtatatgcagcttctataattatatgacatgtatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgttatatcttcttgcaggattgtatatgcagcttctataattatatgacatgtatgat 550

                                                                       
Query: 181 acagttgatcaaatcttctaattcgtttttaataacaaatactaggttgtaagtttctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acagttgatcaaatcttctaattcgtttttaataacaaatactaggttgtaagtttctgc 490

                                                                       
Query: 241 ttttatagatcggatcagtacattaaaaccacagcatagctaatcgatactctttcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttttatagatcggatcagtacattaaaaccacagcatagctaatcgatactctttcagaa 430

                                                                       
Query: 301 atgacatagtcattagcttttttcctactacttgaattcttg-tttttttttttttaccc 359
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 429 atgacatagtcattagcttttctcctactacttgaattcttgttttttttttttttaccc 370

                                                                       
Query: 360 gtagatgaatattttgctctaaaagtacatatacataaatatacaagtaatgtttctgtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtagatgaatattttgctctaaaagtacatatacataaatatacaagtaatgtttctgtt 310

                                                                       
Query: 420 caaagaatttgttttatgactctgagtcactcatctctttggaagagagttttgatctta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caaagaatttgttttatgactctgagtcactcatctctttggaagagagttttgatctta 250

                                                            
Query: 480 tgagcctctggtatttatagattaggcatggtcatagctgctgctggga 528
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgagcctctggtatttatagattaggcatggtcatagctgctgctggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space:   476042
Effective search space used:   476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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