NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNCCCNNNCCCCATATTCTA
GAATGTTCGGGCTCTCTAATANTCTTGACAGAGCCGCTACTTACGAGACA
TCACTTATTCTCGNGTTTATTCTATGGGGAAAGAAAGAGACCCTTCCCGG
GCTCTCCGGGGTGGGTNNTCACAAAAAAATTTTTGCCCCCTTTTAAACCC
CTCTATTGTTTTAAAAACCCCCCGCTTTTTTTTTTCTCTCTATTAGGGGA
AACAAAAAAAAAAACACCGTGGGGGCACACTTTTATATCTTCCTCTTTGG
TGGCGCTTTTTTTTTTTTCCCTTTTCCCTCTNAGACTTTATTTCCTTACC
AAAAATATTAGAAAAATTTTTGTGGCCCCCCCCCAACATCTTGGGGGGGC
GAATAAACTTTCTCTTTTTTCACTTGGGGAAAATCCCCCCCCCCCATTTT
TTTCACCTCCCGGGGGAAACCGCCCAAACCCCCCCTAGATGGTTTTTCCC
CACCTCCACCAATTTTTATAAGATATCGTTTTCTCAGATGAAAAAAACCA
GCAATGTTTTTTCCGTCGTTTTTTGTGTGAGGGGAGTAAACTTCCCTCTT
TATTTGGGNCCCCGCNNNCNCTTTTGTAGAGGTATATANCCCATTTTTTT
TTTTGCGCCACACGAAAAATTGCCTCTCCCCTACCCCCGAGTATTTATCC
AGTCCCTTCTCTTTTCTTCCTTTTNTTNNNTNNNNNCNTTNNNNNNNNNN
NNNNNNNNNNNNNNAACCCTGTNATTTCGTGACTGCTAATAGTNNNNNNN
NNCNNNCCTNNTCCCTNTTGGATGTTGTAGCGCCNNNNTGTGGTAACAAA
ATATAGGTGTTTNNNNTAGGNCNTGTTNTTCCATAGAGAGGGGGGGAAGA
GGATTTACTAATCTTAGGGGGGCGGAGTTATTATTGGCAGATATGCTAGA
TGNNNGAGAGGGAGAGGAGCAATCTGTTTATTTTTGGGTGTGGCAATGAG
AAAGAAGGGAGAGAGTATGAGAGTAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGTCAGAAGCAGTTAATCGGTGTGTGT
GTGTATGTGTGTGTGTCTGCGTGTGTGTCTGTGTTTGCATTCTATGGCAC
AGATATAGAGGTAAGAATAAATCTTTTAGAATCTGGTTCCACCATATTAT
TCCTAGGGATCAAACATCAGGGTTGGTGTCATGCACTTCTAACCACTGAG
AAATCTTGGTGGCTGTAGTAGAATAGTTTTAACTAATTTACTCATTTTTT
GTTTCTTTCATTTAAACTCTAGGATTGACTTAGCTGTTCGTGACCACTGT
TGAAAATATCCCAGGTTTATTTCTTTTCTGTTTTTTTTTTTCACAACTAA
AATTCACATTTGCATTCTTTGATGCCTTGGGTGCTTTGCAACAATAACAA
GCTGCTCATGGTGGTGCTGCACACTTCCTATTTAATGGAATTGGCTGCTG
CTCTGAGAATCAGTAATGAGGTAACCCGATGAGCATTCTGTATTCAAATG
TAATGTTATTTGAAGTAAAGCTATCAAGGTCTAAATTCACTTTGAGGTTT
TATTATTGCTGTTTGTCTTTCTGTTGGCAAATAAGAAATCATTTTAACTA
AAGAGGAAATTGCATTACCAGGTATAATAAGATTATCCTATT

Query= MSMg01no094_e20.g1 MSMg01no094_e20.g1 CHROMAT_FILE:
MSMg01no094_e20.g1 PHD_FILE: MSMg01no094_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:54 2005
         (598 letters)



>mm_chr1_113631815_113632811
          Length = 997

 Score = 1021 bits (528), Expect = 0.0
 Identities = 562/574 (97%), Gaps = 3/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgtgtgtgtatgtgtgtgtgtctgcgtgtgtgt--ctgtgtttgcattctatggcacaga 81
           ||||||| | |||||||||||||| ||||||||  |||||||||||||||||||||||||
Sbjct: 222 tgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtttgcattctatggcacaga 281

                                                                       
Query: 82  tatagaggtaagaataaatcttttagaatctggttccaccatattattcctagggatcaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tatagaggtaagaataaatcttttagaatctggttccaccatattattcctagggatcaa 341

                                                                       
Query: 142 acatcagggttggtgtcatgcacttctaaccactgagaaatcttggtggctgtagtagaa 201
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 342 acatcaggattggtgtcatgcacttctagccactgagaaatcttggtggctgtagtagaa 401

                                                                       
Query: 202 tagttttaactaatttactcattttttgtttctttcatttaaactctaggattgacttag 261
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402 tagttttaactaatttactcattttt-gtttctttcatttaaactctaggattgacttag 460

                                                                       
Query: 262 ctgttcgtgaccactgttgaaaatatcccaggtttatttcttttctgtttttttttttca 321
           ||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||
Sbjct: 461 ctgttcgtgaccactgttggaaatatcccaggtttctttcttttctttttttttttttca 520

                                                                       
Query: 322 caactaaaattcacatttgcattctttgatgccttgggtgctttgcaacaataacaagct 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 caactaaaattcacatttgcattctttgatgccttgggtgctttgcaacaataacaagct 580

                                                                       
Query: 382 gctcatggtggtgctgcacacttcctatttaatggaattggctgctgctctgagaatcag 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctcatggtggtgctgcacacttcctatttaatggaattggctgctgctctgagaatcag 640

                                                                       
Query: 442 taatgaggtaacccgatgagcattctgtattcaaatgtaatgttatttgaagtaaagcta 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 taatgaggtaacccgatgagcattctgtattcaaatgtaatgttatttgaagtaaagcta 700

                                                                       
Query: 502 tcaaggtctaaattcactttgaggttttattattgctgtttgtctttctgttggcaaata 561
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 701 tcaaggtctaaattcactttgaggttttattattgctgtttgtctttccgttggcaaata 760

                                             
Query: 562 agaaatcattttaactaaagaggaaattgcatta 595
           ||||||||||||||||||||||||||||||||||
Sbjct: 761 agaaatcattttaactaaagaggaaattgcatta 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space:   580356
Effective search space used:   580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)