BAC Information

Click to search

BAC

Clone NameMSMg01-094F19
Chromosome1 (Build37)
Map Location 82,167,842 - 82,168,236
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094F19.T7 (MSMg01no094_f19.b1)MSMg01-094F19.TJ (MSMg01no094_f19.g1)
ACCAG311554AG311555
length917674
length of high quality
(start - end)
---392 (53 - 444)
definitionCHROMAT_FILE: MSMg01no094_f19.b1 PHD_FILE: MSMg01no094_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:58 2005CHROMAT_FILE: MSMg01no094_f19.g1 PHD_FILE: MSMg01no094_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNAATTTTNTTTTNNNNNCCNAANNNN
TTGCGTGTGCGGGCTCGGNNTTTGGGGNGNNTCTTGGAGGGNNNTTCCGT
TTTTAGAGGGGGCTTCCGGCGTGTTTCCTTTCCCAAAAGGGGGGGGGAGG
GGGTTTCCCTTTAGGGTGTATTTGTATTTTTTGCCCCCTGCGGGGGGGGG
GGTGGTGCGTGGGGGTGAGGGTGCTGTAGGGCAGTTGTTGGGATGGTGCA
CCCGTCTTATTCCCTGTGTTTGTTTCGCGGGGCGCGGCGTTTTTGTTGGG
GGGGGGGTTTGTCACGCCGCTTACCTAGGACTTAACGGACGAACGTGTCC
CCTTTTACTGTTGCCTGTGGGCGGGGGCGGGGTATTCGTGCTGTCTGTTT
GTCGCTCCGATTCTTTTTTTTTTTTACTATTCCCTTGGCCTGTCTATGGC
CATCGTACCCTTTTTTTTTTTTTTCCCCCCCCCGCCCCGGCTGTTTGTTA
GTTTCTTAGCTTCGTCGGTTCCTTTCGCCGTCTCCCCCCTACATCAAAAG
AAGTAATGCGGTGTGGGGGGGGGGGGGGGGGGTGCCGCTTCGTATTTTTT
TTTGTTGGTATCTCTTTCTGTTTTGTGTTTGGTGAGCTGTCGGCCGGGGC
CGGTTGTTTTTGTTCTGGTTGGCCCCGTGTCTCACGATATGCCCTTGATG
TGGCGCGGGCTTTGAGCGGGCTATTATTTGCGGGTCGAAGCGGTAGTGTG
TGGCCTGCGGTGAGGTGCGCGCGCGTTGCTGGTGCCGTGTTTTGATGTAC
GCGCGTTCTGCTTATTGTTTGCGCCGTGCTTTTTCTCTTGTTCGTATTGC
TTTGCGGCCGCGGCGGCGCCTGTGCGCGTATCGGTGTTTGTGGTTGGCGA
GTGTTTTGTTGCCGTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTGTTTCTTAATCACCTCCCCACAGACAGCAGGTTCTTTTCGTGGGGGA
CCCTGGAATAAAACACTTCAGAATCTTCACTCCGTGCTCGCCCACTCCCC
TCACTTAGGCCTATAGCGAGGCCAGATGTTTGAGGTGGGAATACGTGAAC
ACACAGCCACTCACCATGATGGGCAGGAAGCAGCTAAAGCAATGATTCTC
AACTAACCCATAGGTTGCAACCCCTTTGGGAGTCAAACAACCCTTTCACA
GGGGTAACATACCAGATATCTTGCATTTCAGAGATTTACATTATGATTCA
TAGCCATAGCAAATTTACAGTTATGAAGTAGCAATGAAAATAATGTTATG
GGGGGGGAGGTGAGCACAACATAAGGAACTATATTGAAGAGTCACAGCAT
TATGAAGGCTGAGAAACATTGACTTAGAGACAGGGGCTCCTTCAATATCT
CCTTCAAGGAATATCTGTCAAGACTCACTTCCTCCGGTTATGTAGTCCTC
TAAAGGCATTTCCTTCTCTAAAATATGACAGGCTAGAGACCACGCCTTTA
GTCCTTGCCTTTAGAAGACTCTTCCGAACCTATATTCTAATGCGAAGCTT
GACTCTACTGCAACAAGTGCGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_f19.g1 MSMg01no094_f19.g1 CHROMAT_FILE:
MSMg01no094_f19.g1 PHD_FILE: MSMg01no094_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:59 2005
         (392 letters)



>mm_chr1_82167642_82168433
          Length = 792

 Score =  717 bits (371), Expect = 0.0
 Identities = 388/395 (98%), Gaps = 3/395 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttcttaatcacctccccacagacagcaggttcttttcgtgggggaccctggaataaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tgtttcttaatcacctccccacagacagcaggttcttttcgtgggggaacctggaataaa 260

                                                                       
Query: 61  acacttcagaatcttcactccgtgctcgcccactcccctcacttaggcctatagcgaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacttcagaatcttcactccgtgctcgcccactcccctcacttaggcctatagcgaggc 320

                                                                       
Query: 121 cagatgtttgaggtgggaatacgtgaacacacagccactcaccatgatgggcaggaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatgtttgaggtgggaatacgtgaacacacagccactcaccatgatgggcaggaagca 380

                                                                       
Query: 181 gctaaagcaatgattctcaactaacccataggttgcaacccctttgggagtcaaacaacc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 381 gctaaagcaatgattctcaactaacccataggtcgcaacccctttgggagtcaaataacc 440

                                                                       
Query: 241 ctttcacaggggtaacataccagatatcttgcatttcagagatttacattatgattcata 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcacaggggtaacataccagataccttgcatttcagagatttacattatgattcata 500

                                                                       
Query: 301 gccatagcaaatttacagttatgaagtagcaatgaaaataatgttatgggggggg---ag 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 501 gccatagcaaatttacagttatgaagtagcaatgaaaataatgttatgggggggggggag 560

                                              
Query: 358 gtgagcacaacataaggaactatattgaagagtca 392
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgagcacaacataaggaactatattgaagagtca 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)