BAC Information

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BAC

Clone NameMSMg01-094I19
Chromosome1 (Build37)
Map Location 89,533,197 - 89,533,695
singlet/doubletsinglet
Overlap geneInpp5d
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094I19.T7 (MSMg01no094_i19.b1)MSMg01-094I19.TJ (MSMg01no094_i19.g1)
ACCAG311691AG311692
length656679
length of high quality
(start - end)
318 (15 - 332)505 (58 - 562)
definitionCHROMAT_FILE: MSMg01no094_i19.b1 PHD_FILE: MSMg01no094_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:15 2005CHROMAT_FILE: MSMg01no094_i19.g1 PHD_FILE: MSMg01no094_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATCGAGAGGATCCGCGGAATTCACTGTGTACACTACGCTGGCC
GTGAACTCACAAGATCAGCCCGTCTCTACGTCCTGGGTTCTGGACGTAAA
GGCATGTCCAGCTACACCCCTCTGTGTTGGTTGGTTTGAAATGCCCTCTT
GACACAATCTAGGATCACCAGGGAAGAGAGTCTTTATGAAGAATTGACTA
GATAAGTTTGGCTTGTGGGCATGTCTATAGGGACTTGTCTTCATTGTTAA
TTAATGTAGGAAGACTCAGTCCACTGTGGGTGGCACCATTTCCTTGGCTG
GGCCTTGAACCGTGTAAGAGTGAAGAAAACTATCTGATAACAACCACCGC
CGCATGTGTTTATTCTCTGTGCTCTTGACTGTTGATGTGATACTTCAGGT
TCCTGCCCTGGCTTCTCCACAACACTAGACTGTAATGTGGGCTTGAGGAA
GTCAAATGATCCCTTCCCTCCCCATGCTACCTTTTAATCAGGGCATTTGC
CACAGCAACAGAAATGATGCTAGGAACGCCTGGAAGGTGACTTTTGACCA
CTTATGTCACCTGGCCTCCCTGATTGCATGAGACGTATCTTTTGCCCTGT
AATTGTTTAGTCATCTATAGCTTCTTTCTTCCTGTACTGGACATCCTTTT
TATTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAAGAAACCACATCAGTACTTCCAACAGCCACTTCCTCCAGAC
GGTGCGACTCGAAGGGGGCCAGTTCCATCCAGGGTGTGGCAAAGCTTCCC
TCTAGGGGAAGGGTCTGCTCATACTGAGCTTCATGGGAGAGGCCAGCGTG
AACCACTGTGGGCTGGAGTAACGGCTGTACTGCATAGCATGGTGGTCAGG
CTGAGCACAGTTCATACTTTTTCTCGTGTGCGCATGAACACCAGGATGGA
AGGCGGTGCGGATGGGAGGCAGGGCGGATGGAAGGTGTGGTCTAGGGGTC
AGGGAGTCCCTTTCCCAGTCCAGTCATTGGTGGGAAGCAACAGAACAAAT
CTGAGTACCCGCAAGCAAGCGCCCTTTTTTAAGCTTGGCAGGTGTTCGTT
GCCTGAATACTTTATGAGATGTGGACGCCACCAGCTTCTGGAGACATGGC
TCAGGGGAGGTGGCTTAGGCATGCAGCCGTACGCTCTACTTTTTTTTTTT
TTTTTTCTAAGCCTAGGACTGTGTGAATTTTGCCTGGTGGCTTGGCGCCC
TTGGCAAGTGTCTCCCTGCTAGGCATCTACTCCCTTTAATTAAAAGTCAG
TCCGGTCCTTTGACCTTCCCCCCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_i19.g1 MSMg01no094_i19.g1 CHROMAT_FILE:
MSMg01no094_i19.g1 PHD_FILE: MSMg01no094_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:15 2005
         (505 letters)



>mm_chr1_89532997_89533901
          Length = 905

 Score =  899 bits (465), Expect = 0.0
 Identities = 491/501 (98%), Gaps = 4/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaaaccacatcagtacttccaacagccacttcctccagacggtgcgactcgaagggg 60
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 201 aaagaaaccacatcagtacttccaacagtcacttcctccagacggtgggactcgaagggg 260

                                                                       
Query: 61  gccagttccatccagggtgtggcaaagcttccctctaggggaagggtctgctcatactga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gccagttccatccagggtgtggcaaagcttccgtctaggggaagggtctgctcatactga 320

                                                                       
Query: 121 gcttcatgggagaggccagcgtgaaccactgtgggctggagtaacggctgtactgcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcatgggagaggccagcgtgaaccactgtgggctggagtaacggctgtactgcatag 380

                                                                       
Query: 181 catggtggtcaggctgagcacagttcatactttttctcgtgtgcgcatgaacaccaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggtggtcaggctgagcacagttcatactttttctcgtgtgcgcatgaacaccaggat 440

                                                                       
Query: 241 ggaaggcggtgcggatgggaggcagggcggatggaaggtgtggtctaggggtcagggagt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaggcggggcggatgggaggcagggcggatggaaggtgtggtctaggggtcagggagt 500

                                                                       
Query: 301 ccctttcccagtccagtcattggtgggaagcaacagaacaaatctgagtacccgcaagca 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctttcccagcccagtcattggtgggaagcaacagaacaaatctgagtacccgcaagca 560

                                                                       
Query: 361 agcgcccttttttaagcttggcaggtgttcgttgcctgaatactttatgagatgtggacg 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 agcgcccttttttaagcttggcaggtgttcgttgcctgaatactttctgagatgtggacg 620

                                                                       
Query: 421 ccaccagcttctggagacatggctcaggggaggtggcttaggcatgcagccgtacg--ct 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||
Sbjct: 621 ccaccagcttctggagacatggctcaggggaggtggcttaggcatgcagccgt--ggtct 678

                                
Query: 479 ctacttttttttttttttttt 499
           |||||||||||||||||||||
Sbjct: 679 ctacttttttttttttttttt 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)