Query= MSMg01no094_k04.b1 MSMg01no094_k04.b1 CHROMAT_FILE:
MSMg01no094_k04.b1 PHD_FILE: MSMg01no094_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:22 2005
(608 letters)
>mm_chr1_44906054_44907061
Length = 1008
Score = 1160 bits (600), Expect = 0.0
Identities = 606/608 (99%)
Strand = Plus / Minus
Query: 1 caaaaaacaagtaaatgaggttttatcaaaatatagtaataataaatgcataaaatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 946 caaaaaacaagtaaatgaggttttatcaaaatatagtaataataaatgcataaaataatg 887
Query: 61 agagatgtgtatattgtttataattgatataaataatcaaaatataatgaattatttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 agagatgtgtatattgtttataattgatataaataatcaaaatataatgaattatttata 827
Query: 121 tctcatatatatattttacctgtaagataattttatagaaattgtggcagatcatatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tctcatatatatattttacctgtaagataattttatagaaattgtggcagatcatatgac 767
Query: 181 tctgttttagtgttttgccaataaataacttggtagatattctgttttgctatctacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tctgttttagtgttttgccaataaataacttggtagatattctgttttgctatctacaat 707
Query: 241 tgacatatcagaagatctggctttaagttatttaggataatgtgaaacaaaaacaccttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 706 tgacatatcagaagatctggctttaagttatttaggataatgtgaaacaaaaccaccttt 647
Query: 301 aaagacaagtttaaacagcacacagaaatttattagtgagaatgtttaacaagctgcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aaagacaagtttaaacagcacacagaaatttattagtgagaatgtttaacaagctgcagt 587
Query: 361 gttgcctagcgactattctccgagaccttgcaggatggaggagcaggatcactttcccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gttgcctagcgactattctccgagaccttgcaggatggaggagcaggatcactttcccat 527
Query: 421 cacacgtgtgcatatgctcatagtcaatgtctcccattcccctgtttccttattttatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cacacgtgtgcatatgctcatagtcaatgtctcccattcccctgtttccttattttatac 467
Query: 481 caatataacataagtagtcatttatttttagtcctttccaaacacaaacttgggatttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caatataacataagtagtcatttatttttagtcctttccaaacacaaacttgggatttct 407
Query: 541 tctttatgatttcactctttaactaggtgtcaacttgacatgtgtccttgcctacagcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tctttatgatttcactctttaactaggtgtcaacttgacatgtgtccttgcctacagcac 347
Query: 601 agtaacta 608
||||||||
Sbjct: 346 agtaacta 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_k04.g1 MSMg01no094_k04.g1 CHROMAT_FILE:
MSMg01no094_k04.g1 PHD_FILE: MSMg01no094_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:22 2005
(561 letters)
>mm_chr1_44850447_44851406
Length = 960
Score = 806 bits (417), Expect = 0.0
Identities = 533/607 (87%), Gaps = 62/607 (10%)
Strand = Plus / Plus
Query: 1 caggacagccagggttattcatagaaaccatgcctcaaaaaaaa--aaaaaaaaaaaaaa 58
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 170 caggacagccagggttattcatagaaaccatgcctcaaaaaaaatcaaa----------- 218
Query: 59 acccaagccaaacatcagccctggtctccaaccaagtaacaaaaaaagaagaaagaataa 118
|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 219 --ccaagccaaacatcagccct-gtctccaaccaagtaac-aaaaaagaaggaagaataa 274
Query: 119 aaggagagaaaggtaa--agagagaattattcttttaacattcataattaaatggcatct 176
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaggagagataggtaaagagagagaattattcttttaacattcataattaaatggcatct 334
Query: 177 taccctcaaaaatatgctaggggatcagaatttaaagagaagactatcaaaatttatat- 235
|||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 335 taccctcaaaaacatgctaggggatcggaagttaaagacaagactatcaaaatttatata 394
Query: 236 -------------------------------------atatgatagacagttgcttcata 258
|||||||||||||||||||||||
Sbjct: 395 tatatatatatatatatatatatatatatatatatacatatgatagacagttgcttcata 454
Query: 259 gatatagatagata---a-atgattaatagatagatgatagataaatcaagaattacatt 314
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gatatagatagatagatagatgattaatagatagatgatagataaatcaagaattacaaa 514
Query: 315 aaaaggaggccatgaatttgaaagaggggaagaggtggtatattaaggttttacagggag 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaaaggaggccatgaatttgaaagaggggaagaggtggtatattaaggttttacagggag 574
Query: 375 aaaaggaatgggagaaatgatgtgatcatatttataatttcaaaactaaaaataatagca 434
|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 575 aaaagggatggtagaaatgatgtgattatatttataatttcaaaactaaaaataatagca 634
Query: 435 aaaatgtttggaaagaaaaagtagcagcagaactgaccggcagctttcagatggtatagt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaatgtttggaaagaaaaagtagcagcagaactgaccggcagctttcagatggtatagt 694
Query: 495 ggcccatggtactccatcctgataggagcatggcgctgtccttgcaaaagtatttttacc 554
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 695 ggcccatggtactccatcctgataggagtatggcgctgtccttgcaaaagtatttt-acc 753
Query: 555 caggatg 561
|||||||
Sbjct: 754 caggatg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space: 523450
Effective search space used: 523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
