BAC Information

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BAC

Clone NameMSMg01-094K22
Chromosome1 (Build37)
Map Location 77,741,617 - 77,741,938
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094K22.T7 (MSMg01no094_k22.b1)MSMg01-094K22.TJ (MSMg01no094_k22.g1)
ACCAG311783AG311784
length2,265710
length of high quality
(start - end)
---514 (74 - 587)
definitionCHROMAT_FILE: MSMg01no094_k22.b1 PHD_FILE: MSMg01no094_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:26 2005CHROMAT_FILE: MSMg01no094_k22.g1 PHD_FILE: MSMg01no094_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNCCCCNNNNNNNCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCCNNCCCNNNNNNNNNNNNNNNNNNNNNNNNNNCCCNNNNNN
NNNNTTTATCTCACACCACNNNCNNTNTTTNNTTTTNNTCTCTATATAAA
AACTTTGAGTGTNTNGTCGTCGCTCCTATATCTTCACTCGTAATCTCNAC
CACACTCTACATACTCTCACCGACAGTTAAGCTGTTACTANNCCTGACCG
GNGACATAGCGACAACGCATAATTACATTAATATTTNTCNTCTNNTNTCN
TTNTGTTTNTAGGCGCGCTGCGGTCGTGACACGGCGCGGTCTCTGTGCTG
ACTACTGCTTGCTGCGGTTCTGATGGCGCGTCTNCGCGTCGTTGCGTGTG
CTGTGCTAGTCTACAGTTACTCTTATGCCACTCTGTTACTCTGTCTATAT
CTCTCTGCTACCACTACGATCTATATATTGTAGATATCATCTCTANTATN
ATCTGCTATTGATGCACGCTGGGTNAGCAGACATGATGCGACTCTGGGAN
GCGTACGTGTNCTGCGATGCTATGACTGCTGTGCAGGTNCGTCGACTACT
NCGNATGAGTCTTTGTCATACGNTATCACACGCTATTTTNATGATTGACG
CGANTGAATGTGATGATGCATGTCTCGATCACTGCACGTAGCTGTGGTGT
TTCATAACNGCTGTGTATANCGACGCGGNCGGATGNTANATAGTCATCGC
TGGCAGCAGCGTCACACCCCTCCACTATCATACACACCATCATGTATCTA
TCACTCACACTTNATGACTACTCCCACCACTNCACTCCNATCGTCTNTCG
CCTCGTGGCNGCTGCACTNGACATGCGTAGAGCACTGTCGCACGCGTGTG
CGTGTAGTNGCGNCGACGCTGCTCACGACGTCNCGTATGTCTCACGTCTA
GTGCTACGTCTTGCTGCTGCGTAGTGTGCGNCGACGTCTGACCCCTCTCG
ACTNGTCATACANCTGTGCGTCGANTANTGNTGCGATATTCGGTGGGCGA
TTNATTGAGACNTGATATGCGNCGCTCGCGTCGCGATGATANGTATGCNG
CCGACAGTCAGTGTGATTGCTACACGGCATATGTTGCTGATGCAGTGAAT
GTCGTGTGCGTCGTCTGATCATGCTCTGCGCGCCGNTACTGACTGAGTAG
GTGTTGATCTAGTGCCGTCTCGTGCGTNCANGCTAGCTGCTGCGTAGCCA
GCTGCTGTCGCGNTACGATGTGATGACGCGTCGCCGTGATCTGACGTGNN
ACCCNNANCACTGCGCAGTCGCGATGTATTACGATACAACTGCACGATNA
CGCAGTGANTNAGCGTCGTANTGATACTGATCTGATATGATGATACGACN
GGGTACGAGGCCTGTGTGTACGTAGCTGATCAGCGCATTGGNCGCGTACA
GCTAGTGTGANCGATACACTGGATGCGCGTACGTGCGANGTNGACGCGTG
TGATGCGATCGCGATCGATAGTACACGNCTCGCGATGACTGATGTCGTGN
TCGTCGTCGATGTGGTAGTCGATCAGCGTCTCCGTATGCGCGCTGTCAGC
AGCGCGGCACGTCGCCGTNATGACGTNGGCTGTTANTCGGGATATGCAGC
TGNTGATAGANCGNTGACNGTNGCGTCGCAGCTGTGATGCTGTNCGTCGC
TCGACATCGACATTAGCACCGTCCGTAGTCTAGACNCGTACTAGGAGATC
GCNGCGCTGCCCGTGCAGAATCGATGACGCCGCTGACGACGTGCGTCACT
TGAATGATGATNCTNTCTCGGCTGCGNCNTACTGATCAGCGACTCGTGCN
TGCGCAGTATGATCGTGGAGNTCGCATCTNACTGGGAAATAGATAACTGN
CATCGTNACACNCAAGCTNCANCTCAAATCGTCACGGANACNTCGATTTG
TNAGACGTAGTGAGTTCGATCGTNTGACGANTACGCNGGCATGCAGCGCT
GNCGTGCTGCTCGTGNATNGTATGAGTGATGACTGACTCGGCACGNCAGC
TCGACGGNAGTACGTCGAGTCGTACGATCGATGTAGTGTTTGACGTACGA
CGACAGTTATATACGTGCATCGGCGCNGTTGNANTAGCGTGACATGATCG
CCAGCGTNNTGACNGCAGCNGTACTGTCGGACCGTGTGATGTCGTGACAT
CGAATGCNAAATGANCNGTCTCGCTGCGAGTAGCATGATAGTAGTGCTAC
ATCGTCGTAGTATGN
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTGTTTGTCTATGCCCTTTAAAGGC
TACAGATAGCTGGCAATAATTTTTATATCTTTTCTTCACCCAGCTTATTT
CCTTTTGTGAGGAGGAAGTGTTTTGTTCTGGTTTATTTTGTCTTGTTGTT
TTTTTCAAGGTATGGTTTCTTTGAATAGCCCTGGCTGTCTGGAACTAGCT
CTGTAGACTAGGCTGGCTTTGAACTCACAGAGATCTGCCTGCCTCTGACT
CCTGAGTGCTGGGATTAAAGGCATGAGCCAACACTTCTCAACTCTGGCTT
AATTCTTAATGGTCTAAACCAGTGCTTCCCACACCAAAAATAAGCACGTG
TATGAATAATTCATCTGAGGACCATATTTAAATGAAGATTGCAACTCAGG
AGGCTTTAGTGGAGCCCAAGACTCTGCATTTCTCCCAAACTCATAGCTGA
TACCTACATTACTGATGTGCAGAGTTCACTTGAGTGGTGGAGGCAATGAT
GAGGCATGGATCCCCCACATTCAGCTTGTTTTTGGCAGCTGGCAAATACC
TGTGTTCTCCATATCCAGCTTTGTGTTTATAGACTTGTGCACCCAGGCTT
ACATAATGAACCAGAGTTCTCTTTGTTGCCATAATAACACTTTTCCTTGC
TCCTCATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_k22.g1 MSMg01no094_k22.g1 CHROMAT_FILE:
MSMg01no094_k22.g1 PHD_FILE: MSMg01no094_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:26 2005
         (514 letters)



>mm_chr1_77741617_77742530
          Length = 914

 Score =  588 bits (304), Expect = e-172
 Identities = 319/324 (98%), Gaps = 2/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtttgtctatgccctttaaaggctacagatagctggcaataatttttatatctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cattgtttgtctatgccctttaaaggctacagatagctggcaataatttttatatctttt 263

                                                                       
Query: 61  cttcacccagcttatttccttttgtgaggaggaagtgttttgttctggtttattttgtct 120
           ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 262 cttcacccagcttatttccttttgtgaggggggagtgttttgttctgctttattttgtct 203

                                                                       
Query: 121 tgttgtttttttcaaggtatggtttctttgaatagccctggctgtctggaactagctctg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgttg-ttttttcaaggtatggtttctttgaatagccctggctgtctggaactagctctg 144

                                                                       
Query: 181 tagactaggctggctttgaactcacagagatctgcctgcctctgactcctgagtgctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tagactaggctggctttgaactcacagagatctgcctgcctctgactcctgagtgctggg 84

                                                                       
Query: 241 attaaaggcatgagccaacacttctcaactctggcttaattcttaatggtctaaaccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  attaaaggcatgagccaacacttctcaactctggcttaattcttaatggtctaaaccagt 24

                                   
Query: 301 gcttcccacaccaaaaataagcac 324
           |||||||||||| |||||||||||
Sbjct: 23  gcttcccacacc-aaaataagcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)