BAC Information

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BAC

Clone NameMSMg01-094K23
Chromosome1 (Build37)
Map Location 77,741,554 - 77,741,878
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094K23.T7 (MSMg01no094_k23.b1)MSMg01-094K23.TJ (MSMg01no094_k23.g1)
ACCAG311785AG311786
length1,633719
length of high quality
(start - end)
---387 (73 - 459)
definitionCHROMAT_FILE: MSMg01no094_k23.b1 PHD_FILE: MSMg01no094_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:26 2005CHROMAT_FILE: MSMg01no094_k23.g1 PHD_FILE: MSMg01no094_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTTNN
NNNNNNNNNNNNNNNNNNNTTTTTTCCNNCCCCCNNTTTNNNTTNNTNNT
TCCGACCGCTTTNTNTTTTTCCATCCTATTGCTCCGCGCCACAGCGCNCC
ACCCTCGGTTGTTGGCGCGCCCCGCGCGACGCGCGATCGATATTTGATGA
GACTAATACTGTTAGGAGCGGCGATATAATCTACATTTATGTACCATATA
AGTACATAAGATATACACACGATGTCTTATCAATTGACTACTACTCGAAC
CCACTCTACTGCGGATTAGACTACACAGACAGTGATAGGAAGCCTGTAGA
TTGAGTATATTAAAAAGATCATATTATAATCACACACACTAACTATTCGT
TATGTGTGTTTGATGCGACATTGTTGTGATTATATAGCACATATGTAAGG
ACATGTTAGACATAGTGATCAAGCAGAAGATATAGAGCAGATGGAGAAGA
GCTGTATATTATAATATTTGCACATCCCATCCAGTATTATGTCTATGTTC
TAGCAGCATTAACATACACGCATGTAACGTTGATGCCGCGTTGCCGTGTG
GTGCGTTACGTGCGNCGGGGTTTGTTCTTCGCGTCTGTCCGCATGTTATT
CGTTACCTGCGATACTGTGATGTGGCGCTTCCCACGCAGATTACATGCAT
AGTATTCTTAATGGATGTATCGTATTATGCGAANATGCACATCGGCGGCG
CATATATATGACGTACGAGTGTTATCATGACGAGAATGTGCACGATAATG
ACTAAGATGACGTAACTAACTGCCTAATGTCGAGNGTGAGTAGACGATGC
GAAGTAGTAGATACTATATACGACGATATGATGTCATATTACACACCGTT
AGTGCAGACGAGCAGTATATGACGTGATAACTAGTTGACACGTAGCAGAT
CGCGCCTACGTTGAACACATGATTCGTCGAGTGATCGCACGCTTAGATTA
TATTACATAGACACCGCAGAAGATGATAAGTATGATATGCATAGATGGCG
TAGCGAGACTGACGCTGATCGGACATGAGCGTATGTAGTAAACTATCTAT
CNGCCAACGCGCATACAGCCTCTCTAGACACACTCTATTATTCTTTAGCT
CTTATATAAGCTATAGTGCTGCGCGCGCAGCGGAATGCTGTACGATCGAT
GATATGTGCGACGATTATAGTATGTGAGTGATCGCACAGATTATCAGATA
ATCGTGATCGACGCATCAGTATATATGATGCATAGGCGTGTAGACATGTA
GAGCGTATATATGATACTGCTAGTGTATCTATGTAATTGATATGTTGTGC
GCGCGCNCACACTGTATGACTGTGCCGAATATATATCGTATACANGTAGT
CGATAATTGCGNCGNCGCGACGCTNTCGCTGATAGTGCTTTGATGCTATN
CNCGCACGTCGTGCTAGTANTGCTCATTCGAATCATCGATATCTACTCTA
TATCATATATCGCGCTCATCATATAATCGCAGTATGACTGCTGCGATGAC
GTGTCGTGCGAGACTCGAGGAGACGGTACGAGCACGTGACGCATGACGCC
GCACGCAACAGANTACTATATACTCAGACTANN
GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTGTTTGTCTATGCCCTTTAAAGGCT
ACAGATAGCTGGCAATAATTTTTATATCTTTTCTTCACCCAGCTTATTTC
CTTTTGTGAGGAGGAAGTGTTTTGTTCTGGTTTATTTTGTCTTGTTGTTT
TTTTCAAGGTATGGTTTCTTTGAATAGCCCTGGCTGTCTGGAACTAGCTC
TGTAGACTAGGCTGGCTTTGAACTCACAGAGATCTGCCTGCCTCTGACTC
CTGAGTGCTGGGATTAAAGGCATGAGCCAACACTTCTCAACTCTGGCTTA
ATTCTTAATGGTCTAAACCAGTGCTTCCCACACCAAAAATAATCACGTGT
ATGAATAATTCATCTGAGGACCATATTTAAATGAAGATTGCAACTCAGGA
GGCTTTAGTGTAGCCCAAGACTCTGCATTTCTCCCATACTCATAGCTGAT
ACCTACATTACTGATGTGCAGAGTTCACTTGAGTGGTGCAGGCAATGATG
AGGCATGGATCCCCCACATTTCAGTTGATTTTGGCAGCTGGCAAACCCCT
GTGGCCACTTTATCCAGCTTTGCGCTTTTCCCCCCTGCGCTCTCTGTCCC
CCCCTTTCGCTTCAGAATTCTCTTGTGCTTTCATCCAATCTTTTTCCCTT
TGCCTCCCCTGCCCCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_k23.g1 MSMg01no094_k23.g1 CHROMAT_FILE:
MSMg01no094_k23.g1 PHD_FILE: MSMg01no094_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:27 2005
         (387 letters)



>mm_chr1_77741093_77741878
          Length = 786

 Score =  578 bits (299), Expect = e-169
 Identities = 320/327 (97%), Gaps = 2/327 (0%)
 Strand = Plus / Minus

                                                                       
Query: 61  cttcacccagcttatttccttttgtgaggaggaagtgttttgttctggtttattttgtct 120
           ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 786 cttcacccagcttatttccttttgtgaggggggagtgttttgttctgctttattttgtct 727

                                                                       
Query: 121 tgttgtttttttcaaggtatggtttctttgaatagccctggctgtctggaactagctctg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgttg-ttttttcaaggtatggtttctttgaatagccctggctgtctggaactagctctg 668

                                                                       
Query: 181 tagactaggctggctttgaactcacagagatctgcctgcctctgactcctgagtgctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tagactaggctggctttgaactcacagagatctgcctgcctctgactcctgagtgctggg 608

                                                                       
Query: 241 attaaaggcatgagccaacacttctcaactctggcttaattcttaatggtctaaaccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 attaaaggcatgagccaacacttctcaactctggcttaattcttaatggtctaaaccagt 548

                                                                       
Query: 301 gcttcccacaccaaaaataatcacgtgtatgaataattcatctgaggaccatatttaaat 360
           |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 547 gcttcccacacc-aaaataagcacgtgtatgaataattcatctgaggaccatatctaaat 489

                                      
Query: 361 gaagattgcaactcaggaggctttagt 387
           |||||||||||||||||||||||||||
Sbjct: 488 gaagattgcaactcaggaggctttagt 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space:   293706
Effective search space used:   293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)