Query= MSMg01no094_m04.b1 MSMg01no094_m04.b1 CHROMAT_FILE:
MSMg01no094_m04.b1 PHD_FILE: MSMg01no094_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:33 2005
(575 letters)
>mm_chr1_121331876_121332850
Length = 975
Score = 1064 bits (550), Expect = 0.0
Identities = 565/572 (98%), Gaps = 4/572 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctcagtacagtgaagagaagaaaagtggggccacttgttcctatggtcatgt 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 208 ggaattctctcagtacagtgaagagaagaagagtggggccacttgttcctatggtcatgt 267
Query: 64 ttgcaaagttagattatttgtttgtttgcttgcttgcttgcttgcttgtttattgctgtg 123
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 ttgcaaagttagattatttgtttgt----ttgcttgcttgcttgcttgtttattgctgtg 323
Query: 124 tgtgtgcacacttgagtgcatatgcacttagaggccagaagggggcatcaggggacctcc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 tgtgtgcacacttgagtgcatatgcacttagaggccagaagggggcatcaggggtcctcc 383
Query: 184 atcattatccctctgggtattcctctttatgggggtgggggaggtcgagacagggtttct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcattatccctctgggtattcctctttatgggggtgggggaggtcgagacagggtttct 443
Query: 244 ctgtatagctctaactgtcctggaactcactctgtagaccaggctggcctcgaactcaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtatagctctaactgtcctggaactcactctgtagaccaggctggcctcgaactcaga 503
Query: 304 aatccgtctccctccacctcccaagtgctgggattaaaggtgtgtgccaccacacccggc 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatccgtctccctccacctcccgagtgctgggattaaaggtgtgtgccaccacacccggc 563
Query: 364 cctgggtattcctttgagtcaggatctttccttgaccctggtgttcaagttttttcaggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctgggtattcctttgagtcaggatctttccttgaccctggtgttcaagttttttcaggt 623
Query: 424 gggctgaaacctccctattttctgtcaaatggcttaccaacttgaaatgtctaatgaaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggctgaaacctccctattttctgtcaaatggcttaccaacttgaaatgtctaatgaaca 683
Query: 484 ttgaagactgcatacttaaatgtcactaagagagacaattatcaaaaggtgatatcagtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgaagactgcatacttaaatgtcactaagagagacaattatcaaaaggtgatatcagtc 743
Query: 544 tagacagggatctaagctcccaggtgaggaaa 575
||||||||||||||||||||||||||||||||
Sbjct: 744 tagacagggatctaagctcccaggtgaggaaa 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_m04.g1 MSMg01no094_m04.g1 CHROMAT_FILE:
MSMg01no094_m04.g1 PHD_FILE: MSMg01no094_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:33 2005
(601 letters)
>mm_chr1_121380253_121381253
Length = 1001
Score = 870 bits (450), Expect = 0.0
Identities = 466/472 (98%), Gaps = 3/472 (0%)
Strand = Plus / Minus
Query: 1 actttgtgaggcatctctggcttgggctgtgttgacttttatgatgtgaccggctccttg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 470 actttgtgaggcatctctggcttgggctgtgttgacttttataatgtgaccggctccttg 411
Query: 61 cccccatccctagcagtactgacttggaattctgcaactcccatttctgcttctcagctt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cccccatccctagcagtgctgacttggaattctgcaactcccatttctgcttctcagctt 351
Query: 121 tgtcctatcctggttccccttgggtgacttcagagttgccagactgtcaaggctctttct 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgtcctatcctggttcctcttgggtgacttcagagttgccagactgtcaaggctctttct 291
Query: 181 cttccagcccttctctctttgaatgagttaagtgtttctaaggtgcaggggagggctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cttccagcccttctctctttgaatgagttaagtgtttctaaggtgcaggggagggctgga 231
Query: 241 gaaagggcttggtgctaagatgacca-ccccaactccagccccaggggatctgacatcct 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 230 gaaagggcttggtgctaagatgaccacccccaactccagccccaggggatctgacatcct 171
Query: 300 cttctggcctctgaggtcaccgcattcatgtgcgtccacacatgcacacccagccacccc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 cttctggcctctgaggtcaccgcattcatgtgcgtccacacatgcacacccagccacccc 111
Query: 360 ctccacacacacacacacaatttaaaatgaaaatcaaacatttaaagtatagggatgtct 419
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctc--cacacacacacacaatttaaaatgaaaatcaaacatttaaagtatagggatgtct 53
Query: 420 gtcatatgtcatttgctttcaactggataggacacacaccatctccaagctc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 gtcatatgtcatttgctttcaactggataggacacacaccatctccaagctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
