BAC Information

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BAC

Clone NameMSMg01-094P12
Chromosome1 (Build37)
Map Location 131,033,530 - 131,033,812
singlet/doubletsinglet
Overlap genenone
Upstream geneR3hdm1, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b, LOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094P12.T7 (MSMg01no094_p12.b1)MSMg01-094P12.TJ (MSMg01no094_p12.g1)
ACCAG311997AG311998
length690700
length of high quality
(start - end)
289 (62 - 350)529 (74 - 602)
definitionCHROMAT_FILE: MSMg01no094_p12.b1 PHD_FILE: MSMg01no094_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:50 2005CHROMAT_FILE: MSMg01no094_p12.g1 PHD_FILE: MSMg01no094_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTATACGACTCCTATAGCGAGAGATCCGCGGAATTCTAGCCAT
ATCTGAAGGGAAAACCACCAGTTCATTGACTTTATCGTTCTGTTAACTTG
GGACACTCTCATAAATTAGATCTGCAAGGGTCATAAAATGTGTCTAGTCC
CATTTTCTCAATTCCCATGGAAGAACACTGAAAAGCCTACAAGCTTACGT
CACACGACTGACCATGGTGGTTTCCTAATGCTCAGTGCTCTGTGTTTCAA
ATGCATCACACCAAGCATGCTTTGACTGTTGTTGTTGCTGCTGCTGCTGT
TGTTACCTTCTAAGTGCTATTCCCACAAGATAACAAACCAAGGAATGTTT
TCTCAGCAACTACCCAAAAGGTCCTCAGGATCGCAGGCTACGGGGAGCTG
GAGGCCAGCTGGATATTGCTGAAGTGCCTCCCGTGCAAACATGAAGACCT
GAGTTTTAATTCCCAGCACTGTTGCAGAGAAAAAGAAAAAGCCAGGCTTG
TGCTTTAATCAATCTCAGGGCTGGGAGGCAGAGATGGGATGGTCCCCAAG
GCTGGCCAGTTTGTCTATCTGAACTGATAAGCCTCAAAACATAAGGCTGA
GAATGATGCCAGCCTCTGACTTCCATATGCATGCTCGCAAATGTGTGTGT
GTGTGTGTGTGTGTCACATTGAGAGAGATACACACCTCTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAGCTTGATAAACAGCTTCAATGAA
GTAGCTGGATATAAAATTAACTCACACAAGTCAATGGCCTTTCTCTACAC
AAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAA
TAGAAACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTG
AAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGA
AGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCA
ATATAGTAAAAATGGCTATCTTGCCAAAAGCATTCTACAGATTCAATGCA
ATCCCCATCAAAATCCCAACTCAATTCTTCAACGAATTAGAAAGGGTGAT
CTGCAAATTCATCTGGAATAACAAAAACCCTAGGATATCAAAAACTCTTC
TCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTG
TACTACAGAGCAATTGTGATAAAAAACTTCGTGGTACTAGTATAGTGACA
CAGAAGTAGACCAGCGGAATAGAATTGAAGACCCAGAAATGAACCCACAC
ACCTATGGTCACTTTATCTTTGACCAGGGAGCAAAAACTATCCAGCGGAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_p12.b1 MSMg01no094_p12.b1 CHROMAT_FILE:
MSMg01no094_p12.b1 PHD_FILE: MSMg01no094_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:50 2005
         (289 letters)



>mm_chr1_131033330_131034015
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 283/286 (98%), Gaps = 3/286 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccaccagttcattgactttatcgttctgttaacttgggacactctcataaattagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aaaccaccagttcattgactttatcgttctgttaacttgggacactctcataaattagat 424

                                                                       
Query: 61  ctgcaagggtcataaaatgtgtctagtcccattttctcaattcccatggaagaacactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctgcaagggtcataaaatgtgtctagtcccattttctcaattcccatggaagaacactga 364

                                                                       
Query: 121 aaagcctacaagcttacgtcacacgactgaccatggtggtttcctaatgctcagtgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaagcctacaagcttacgtcacacgactgaccatggtggtttcctaatgctcagtgctct 304

                                                                       
Query: 181 gtgtttcaaatgcatcacaccaagcatgctttgactgttgttgttgctgctgctgctgtt 240
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 303 gtgtttcaaatgcatcacaccaagcatgctttgactgttgttg---ctgctgctgctgtt 247

                                                         
Query: 241 gttaccttctaagtgctattcccacaagataacaaaccaaggaatg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gttaccttctaagtgctattcccacaagataacaaaccaaggaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)