XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGTGAT
CAGTAATTCTTTCCTTTCAGCACACAGAACACAATGTGCCACTTGTACCC
GATCTCCATGGTTTCAGATAGAGAATCAGATGTCGTTCAGGTCTTTGCAG
ATAATGTGACCTTTCTAACTGTTTTTGGTACTTTTTTCTTTAGGATTTGA
ATGTTCTCTGTCTTTAACTTCTTACATTTGCATGTACAATGTGTGTTCCT
GTGTGATTGTGTGTGTGTGTGTTTGTGTGTGCACACGCGCACGCGAGTGT
AAGAGATATCATAGGACAGCTTCTGGAAGTGTCTTTCCTTGGGCACTAAC
CTTTTTTTATCCCCCCCACCCGGTCCCTCACTTCATCATAACCCTCTATG
TAGGCTGCCACAGAGTGAAATGCCTTTCTGACCGGTCTCCCTCTTTTATC
CCACGTAATTCTCCGAGTATCTATGCCCTGATTTGCTTATACCTTGATCT
ACGCATAGTCACTCATTTATAGCCTTCTACCTTGCTTTAATTATCATTTT
TTCCCCCCTTTTTTATTTATACATAATCACCCATTTTTTCTTATATCATA
TCTTTTCTTTTTCCTATCTCTCCTCTCTCCCCTTTTTTTTTTACCACTTT
TTACTATCTTATCTATATATCTCATTCTCCACCTTTATCTCTCTCCTAAT
ATTCTTTTATCTCCCCCAATCTTC

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGTGGTTTGTTCGTTTTGTTTTGTG
TCTCACATATGTTCTGTGTATTGTGGGAAGACAGTTTCTGATCTTTCTGT
GTCACTCATAATCTTTCTACCTCCCTTTTTCCCTCTCCTCCTCCCTTCTC
TCTCCTCCCTCTTTTCCCTCTCTGGCTCCCTCCCCCTCTCATCCTCTCTC
CCTCCCTCTCTCTCTCCCCTTCCCACCTTTCTGCCTTCCCACTCCGCTTC
CCCTTCTTGCTCTTCTTGCTCTGTTTTCCTGCCACACAGATGTTTTACAC
AACAGACAATCTTTTCCTTTTTTTCACCTATCATGTTATGGAAATGAGAA
ATCCACATTTTTCCCTTTAGAAAAGCTTTTATGGGTGCACACTGCTCTTG
GTGACCAAAAAGTGCTCAGCTTTTCTGATCTGCCCCAGAGAAAGGCTATG
AAAATAGCGCCACAGATTCCAGAGAAATTAAAATACTTATACACACACTT
GGACCACCGTTTTGAAATCTAGAAAAAAATGGATAAGTTCCTGCCAAACC
CATCTCAAAATCAACCTCAGAAATGAAACACTTGAAGAACAGATTAAAGC
GTGGAAAGAAGAAAGTTCTCAAGAGCCCTTGCTCAGCAAGTAGCAGATGC
CATCATAGCCC

Query= MSMg01no095_d10.g1 MSMg01no095_d10.g1 CHROMAT_FILE:
MSMg01no095_d10.g1 PHD_FILE: MSMg01no095_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:10 2005
         (603 letters)



>mm_chr1_122344518_122345522
          Length = 1005

 Score = 1089 bits (563), Expect = 0.0
 Identities = 594/605 (98%), Gaps = 2/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtggtttgttcgttttgttttgtgtctcacatatgttctgtgtattgtgggaagaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 caggtggtttgttcgttttgttttgtgtctcacatatgctctgtgtattgtgggaagaca 260

                                                                       
Query: 61  gtttctgatctttctgtgtcactcataatctttctacctccctttttccctctcctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttctgatctttctgtgtcactcataatctttctacctccctttttccctctcctcctc 320

                                                                       
Query: 121 ccttctctctcctccctcttttccctctctggctccctccccctctcatcctctctccct 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 321 ccttctctctcctccctcttttccctctctgtctccctccccctctcatcctctccccct 380

                                                                       
Query: 181 ccctctctctctccccttcccacctttctgccttcccactccgcttccccttcttgctct 240
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct: 381 ccctctctctctccccttccctcctttctgccttcccattccgcttccccttcctgctct 440

                                                                       
Query: 241 tcttgctctgttttcctgccacacagatgttttacacaacagacaatcttttcctttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttgctctgttttcctgccacacagatgttttacacaacagacaatcttttcctttttt 500

                                                                       
Query: 301 tcacctatcatgttatggaaatgagaaatccacatttttccctttagaaaagcttttatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacctatcatgttatggaaatgagaaatccacatttttccctttagaaaagcttttatg 560

                                                                       
Query: 361 ggtgcacactgctcttggtgaccaaaaagtgctcagcttttctgatctgccccagagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgcacactgctcttggtgaccaaaaagtgctcagcttttctgatctgccccagagaaa 620

                                                                       
Query: 421 ggctatgaaaatagcgccacagattccagagaaattaaaatacttatacacacacttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctatgaaaatagcgccacagattccagagaaattaaaatacttatacacacacttgga 680

                                                                       
Query: 481 ccaccgttttgaaatctagaaaaaaa--tggataagttcctgccaaacccatctcaaaat 538
           |||| |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||
Sbjct: 681 ccactgttttgaaatctagaaaaaaaaatggataatttcctgccaaacccatctcaaaat 740

                                                                       
Query: 539 caacctcagaaatgaaacacttgaagaacagattaaagcgtggaaagaagaaagttctca 598
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 caacctcagaaatgaaacacttgaagaacagattaaagcgaggaaagaagaaagttctca 800

                
Query: 599 agagc 603
           |||||
Sbjct: 801 agagc 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1005
Length adjustment: 10
Effective length of query: 593
Effective length of database: 995
Effective search space:   590035
Effective search space used:   590035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)