Query= MSMg01no095_d20.b1 MSMg01no095_d20.b1 CHROMAT_FILE:
MSMg01no095_d20.b1 PHD_FILE: MSMg01no095_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:12 2005
(548 letters)
>mm_chr1_143939063_143940014
Length = 952
Score = 1006 bits (520), Expect = 0.0
Identities = 537/544 (98%), Gaps = 4/544 (0%)
Strand = Plus / Minus
Query: 9 tctctgtttagctctgtatcccattttttaaattgggctttttgatttgttgatggctaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 tctctgtttagctctgtatcccattttttaaattgggctttttgatttgttgatggctaa 893
Query: 69 ctacttgatttcttcatatattttggatattagccctctgtcaaatgcagggttgctgaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ctacttgatttcttcatatattttggatattagccctctgtcaaatgcagggttgctgaa 833
Query: 129 gatcttttccgaatctgtagactgctgttttgtcctattaacaaaatcctttgctttaca 188
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 832 gatcttttccgaatctgtagactgctgttttgtcctattaagaaaatcctttgctttaca 773
Query: 189 gaaaattttgagttatcatgtaggaattatgattttctatgaagcttcctctgttc---a 245
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 772 gaaaaatttgagttatcatgtaggaattatgattttttatgaagcttcctctgttcatta 713
Query: 246 ttaaaataca-tttttgaggagtttgaagagtgacagttttctcagataaacttcctagg 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttaaaatacattttttgaggagtttgaagagtgacagttttctcagataaacttcctagg 653
Query: 305 cactttctttatatgaggctgtgggctgctctaattcactcagtattgtgtaaacctggc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cactttctttatatgaggctgtgggctgctctaattcactcagtattgtgtaaacctggc 593
Query: 365 ttgcaggaatgcctcactctagaatatgccactttgcaaacaacacttggttatgtttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttgcaggaatgcctcactctagaatatgccactttgcaaacaacacttggttatgtttta 533
Query: 425 acttcaaatgtaaaagcagaatgactctgtgcctcatgtacataaacaccaccacatgtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acttcaaatgtaaaagcagaatgactctgtgcctcatgtacataaacaccaccacatgtc 473
Query: 485 tatgaccatctgtgcacaaactaacaaataacgtattcttaatagtagaaaaatgtacta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tatgaccatctgtgcacaaactaacaaataacgtattcttaatagtagaaaaatgtacta 413
Query: 545 ttac 548
||||
Sbjct: 412 ttac 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 952
Length adjustment: 10
Effective length of query: 538
Effective length of database: 942
Effective search space: 506796
Effective search space used: 506796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_d20.g1 MSMg01no095_d20.g1 CHROMAT_FILE:
MSMg01no095_d20.g1 PHD_FILE: MSMg01no095_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:12 2005
(280 letters)
>mm_chr1_143820046_143820725
Length = 680
Score = 526 bits (272), Expect = e-154
Identities = 278/280 (99%)
Strand = Plus / Plus
Query: 1 atatgatgtaaacattgaaagagcaatactatatgtagaagggcaccacctaattggtga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atatgatgtaaacattgaaagagcaatactatatgtagaagggcaacacctaattggtga 260
Query: 61 agaaaggagatgaaggggaaacagaagggggattcaaaaccaactatgtttaaataagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agaaaggagatgaaggggaaacagaagggggattcaaaaccaactatgtttaaataattt 320
Query: 121 tcttggcttgtgggacaaagtcccaaatgatagaaaatcataggatcaatgaatgataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttggcttgtgggacaaagtcccaaatgatagaaaatcataggatcaatgaatgataat 380
Query: 181 atttatcgatcagtactcagaagcaggagaaatgtaccatgtgctaatgatacacatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttatcgatcagtactcagaagcaggagaaatgtaccatgtgctaatgatacacatgac 440
Query: 241 tgtatgaaaaggcttgaagacaaagtggcacctgataagc 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtatgaaaaggcttgaagacaaagtggcacctgataagc 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
