BAC Information

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BAC

Clone NameMSMg01-095D22
Chromosome1 (Build37)
Map Location 20,381,938 - 20,382,345
singlet/doubletsinglet
Overlap genePkhd1
Upstream genenone
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D22.T7 (MSMg01no095_d22.b1)MSMg01-095D22.TJ (MSMg01no095_d22.g1)
ACCAG312205AG312206
length773826
length of high quality
(start - end)
412 (107 - 518)---
definitionCHROMAT_FILE: MSMg01no095_d22.b1 PHD_FILE: MSMg01no095_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:12 2005CHROMAT_FILE: MSMg01no095_d22.g1 PHD_FILE: MSMg01no095_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTNNNTNNNTC
TTNGNNGGATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATGCTTTATCGTATTATCTTCTTTTCCAGCATAA
TGTCCAGCATTATTTAATGCTAATGTATCGCATCAAGAAATAAATACCCA
GAATACAATTCACATAAACCCTCATCTTCCCCCATGTAAACCTATCCAAG
CTGAAATTTGAGTACCTCAGGGCGTTCCTGAGATGGAGGTCTGCATTGTG
GACAGTTTCTACAACAACAACTTCTGTTGCTTCAGCTCCTTCTACAGTCA
TCCCACTGGTAATGACAGCCTCATCCCCAGGCTTCCAGTCCACAGCTTCC
CCCAGAGTCAACACTTTGTCTCCTGCATGTGCAGCTGCTTGAAGATAGGT
GACAGTAACCTCTGGAACTGAACCTAAAGCCACCAAGAGAAAACTTGTTC
AGATACTTTGATTGTTAGTAAGGATATGATTTTATAAAAGGTGCTTGGAA
CACCAGCCAAGAACAGAATAGTGCACTGAAAAACACAGGTATTACCACTA
GACAAAATTTACATGCAAGGTAGTCTTGACATGACATAGAGGAAATGTGC
ATACTTGGGCTTTAGTTTTCTGTTACTTGCAGAGATATAATTATATGAAT
TTCCACCATAGGTATTATGTGCATTTCCTGAGATGTTAATTAATGAAGTA
TCTAGCTCCAAAATCTTTTGCAA
TTTTATTTTTTTTTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAT
GTTGTTTTTTTTGGTTTTTTTTAAAATTATTCTTTTTTAAAGGGGGGGGG
GNNNGGCTTTTTTTAAAAGGGAGAGGGGGGNNCCNNCNCNAAGAAAAGAA
TTTTTTTTTTTTTAAAAAAAGGGAGGGGGNNNNNNNNNNNNNANAAAAAA
AAGGGGGGGGGGGGAAGGGAGAAGAATTTTTTTTTTTTTTCCCCCAAAAA
AAAAAAGGAGAGGGGTGNNNNNNNNNNNNNNANNNNNNNGGNANAAGAAA
NAAAATTTTTTTTTTTTTTTTTTTTGTTATTATTTGAATTAATAAAGGAA
TTAATATTTTTTTTTTTCTCTAAATTTATTTTTAATAAATAATATTTTTT
TTTTTTTTTTTTCCCCCCCCCCCGGTGTTTTTTTTTTTTTTTTTTTTTTT
CGGTTTTTGCCTTTTAAAAAAAAAAAATATTTTTGGGGGTTGTTGGGGGG
GCTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTGTTTTTTTTTATATT
TTTATTATTTTTATTTTTATTTTTTTTTTTCTTTTTCTAAGAGTTTTTTT
TTTTTTTTATTTGTTTTTTTTTTTTTTTATTTGTTGTTTTAGTTTGTTGT
CTGGTGGTTATATTTTTTTTTTTTGTTATTTTTGGTATTTTTTTATTTTC
ATTTTTAGTTTTTTGTATTTTTTTGTGGTTGGTATTTGTTTTTTTTTTTT
TTTTTTTGTTTTATTTTTTTTTTTTGTTTTTTATTTGTTTGTACTTTTTA
TGGATTTTTTTTTTTTTTTTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d22.b1 MSMg01no095_d22.b1 CHROMAT_FILE:
MSMg01no095_d22.b1 PHD_FILE: MSMg01no095_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:12 2005
         (412 letters)



>mm_chr1_20381734_20382545
          Length = 812

 Score =  712 bits (368), Expect = 0.0
 Identities = 398/408 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgctttatcgtattatcttcttttccagcataatgtccagcattatttaatgc 64
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgctttattgtattattttcttttccagcataatgtccagcattatttaatgc 264

                                                                       
Query: 65  taatgtatcgcatcaagaaataaatacccagaatacaattcacataaaccctcatcttcc 124
           |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 265 taatgtatcgcatcaagagataaatacccagaatataattcacttaaaccctcatcttcc 324

                                                                       
Query: 125 cccatgtaaacctatccaagctgaaatttgagtacctcagggcgttcctgagatggaggt 184
            |||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 325 tccatgtaaacctatccaagctgaagtctgagtacctcagggggttcctgagatggaggt 384

                                                                       
Query: 185 ctgcattgtggacagtttctacaacaacaacttctgttgcttcagctccttctacagtca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 ctgcattgtggacagtttctacaacaacaacttctgttgcttcagctcctgctacagtca 444

                                                                       
Query: 245 tcccactggtaatgacagcctcatccccaggcttccagtccacagcttcccccagagtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcccactggtaatgacagcctcatccccaggcttccagtccacagcttcccccagagtca 504

                                                                       
Query: 305 acactttgtctcctgcatgtgcagctgcttgaagataggtgacagtaacctctggaactg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acactttgtctcctgcatgtgcagctgcttgaagataggtgacagtaacctctggaactg 564

                                                           
Query: 365 aacctaaagccaccaagagaaaacttgttcagatactttgattgttag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacctaaagccaccaagagaaaacttgttcagatactttgattgttag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)