BAC Information

Click to search

BAC

Clone NameMSMg01-095E10
Chromosome1 (Build37)
Map Location 59,838,570 - 59,839,112
singlet/doubletsinglet
Overlap geneBmpr2
Upstream geneLOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095E10.T7 (MSMg01no095_e10.b1)MSMg01-095E10.TJ (MSMg01no095_e10.g1)
ACCAG312229AG312230
length711756
length of high quality
(start - end)		588 (60 - 647)65 (75 - 139)
definitionCHROMAT_FILE: MSMg01no095_e10.b1 PHD_FILE: MSMg01no095_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:14 2005CHROMAT_FILE: MSMg01no095_e10.g1 PHD_FILE: MSMg01no095_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTGCGGACCTTTTCTCAAAAATTAAAAATTAAAAAATTAA
AAAAGTAATAGTCACAGGACTCTCCAGTACTAAAACTACATATAAAATGT
ATGAACTCATAAAGCTATAAAAGCTATAAAAAGGCTAAATAAGATAATCT
CTTTATGTAGAGATGATAGAAGATGATGTATTAGATCGTTAAAGTTCAAC
TTACTACCAATCAAAGACAATCTTTTTTACTAATGATGAGGATGGAACAT
AGAATCATGTTCTCTACTCTATAGCCCCCCCCAAAAAAACAAAAGCAACC
CATATCTTTTATCTTTAATTTTTATGTGCTTGAGTGTTTTGCCTCCATTT
ATGTTAGTATACGATACACATGACTGTTGCCGTTGGAGGCCAGAAGGCAC
TAGATCCCCTGGAACTGGATTCACAGATGGTTATAAGGTCTCAGGTAGGG
CTGGGAATAGAACCCAATCCAATCCTTTGTTGAGAACTGCCAGTGCTCTT
ACTCACTAAAACATCTCTCCAGCCCCCAACCCCGCATTTTGCTTTTAAAA
GAATGACTTAGACAATAGTGATAGTGCATGACTCTGTAGGGCAGAGGCAG
GCAAATCTCTGTGCAATCAAGGCCTGCCTGATCCACATAGTGAGTTCCAG
GCTAGCCAGAT

CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGCCTGTGGTAGGAGAATTACTC
TCCCACTTTCTATGATTTTTGCCTTGTTTTAGTTTTGTTTTGTTTTGTTT
TGTTTTGTTTTGTTTTGTGTTTCGAGACACCGCTTCTATAGAAAAAACTG
AAAGTCCCGGACAAGCACAATAGACCAGGATGACCACAAACACAAAAAAC
CGTCTGCCTCAGACTCAGCCTCTGCCACTCAACCGCAACAAACAAACCCC
CGAGCCCCCACCGCCCACTTTATTACATAAAAAAACACCACCCCCTCATC
AATAAAAATTTTTTTTTCCCCCCCCCCCCCCCCCCAATGCCTCAACATTC
TACCCCCCACCCCCCACCCCCAAAAAAAAAAACAAAAACAACCAAGGGCG
GCACGCACCACACAACCCCACCACAACACCAAAACCCAACATCCACACAC
ACCCACAAATACATCAACTCTACTACACCACCCAAACCCCAACAAACTAC
CTAACTCCCAACACCACCCACCACCACCCACCTCACACACACACCCTACA
CCCTACCCCCCAACCTAACACACACGCAACCACCCAACAACAAAGTAATC
ACTCTACCATACTCCTTCATATCAAAACAAACTAACATCGCCACCACCCT
TTACAACACAACCCACCAAACTAATTATAACATACCAGATACCCCTCTTT
CATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_e10.b1 MSMg01no095_e10.b1 CHROMAT_FILE:
MSMg01no095_e10.b1 PHD_FILE: MSMg01no095_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:14 2005
         (588 letters)



>mm_chr1_59838570_59839556
          Length = 987

 Score =  982 bits (508), Expect = 0.0
 Identities = 535/544 (98%), Gaps = 2/544 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcggaccttttctc-aaaaattaaaaattaaaaaattaaaaaagtaatagtcacagg 59
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 actgtggaccttttctcaaaaaattaaaaattaaaaaattaaaaaagtaatagtcacagg 484

                                                                       
Query: 60  actctccagtactaaaactacatataaaatgtatgaactcataaagctataaaagctata 119
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 483 actctccagtactaaaactacatataaaatttatgaactcataaagctataaaagctata 424

                                                                       
Query: 120 aaaaggctaaataagataatctctttatgtagagatgatagaagatgatgtattagatcg 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaaggctaaacaagataatctctttatgtagagatgatagaagatgatgtattagatcg 364

                                                                       
Query: 180 ttaaagttcaacttactaccaatcaaagacaatcttttttactaatgatgaggatggaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttaaagttcaacttactaccaatcaaagacaatcttttttactaatgatgaggatggaac 304

                                                                       
Query: 240 atagaatcatgttctctactctatagccccccccaaaaaaacaaaagcaacccatatctt 299
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 303 atagaatcatgttctctactctatag-cccccccaaaaaaacaaaagcaacccatatctt 245

                                                                       
Query: 300 ttatctttaatttttatgtgcttgagtgttttgcctccatttatgttagtatacgataca 359
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 244 ttatctttaatttttaagtgtttgagtgttttgcctccatttatgttagtatacgatgca 185

                                                                       
Query: 360 catgactgttgccgttggaggccagaaggcactagatcccctggaactggattcacagat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 catgactgttgccgttggaggccagaaggcactagatcccctggaactggattcacagat 125

                                                                       
Query: 420 ggttataaggtctcaggtagggctgggaatagaacccaatccaatcctttgttgagaact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggttataaggtctcaggtagggctgggaatagaacccaatccaatcctttgttgagaact 65

                                                                       
Query: 480 gccagtgctcttactcactaaaacatctctccagcccccaaccccgcattttgcttttaa 539
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 64  gccagtgctcttactcactaaaacatctctctagcccccaaccccgcattttgcttttaa 5

               
Query: 540 aaga 543
           ||||
Sbjct: 4   aaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space:   564706
Effective search space used:   564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |