Query= MSMg01no095_f03.b1 MSMg01no095_f03.b1 CHROMAT_FILE:
MSMg01no095_f03.b1 PHD_FILE: MSMg01no095_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:18 2005
(452 letters)
>mm_chr1_169019281_169020131
Length = 851
Score = 781 bits (404), Expect = 0.0
Identities = 434/446 (97%), Gaps = 5/446 (1%)
Strand = Plus / Minus
Query: 4 ggaattcacttggttccttgaggaaaggagtgaattgaatccactgagtgaaagacagca 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ggaattcacttgggtctttgaggaaaggagtgaattgaatccactgagtgaaagacagca 737
Query: 64 caagttcttgattgctcttaagtaaatgccaaaactgtcagtatacacacacacacacac 123
|||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 736 caagttcttgattgttctcaagtaaatgccaaaactgtcagt----acacacacacacac 681
Query: 124 acacacacacacacacacacacacacacacaccttcacttatattcatcgtttgagaact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acacacacacacacacacacacacacacacaccttcacttatattcatcgtttgagaact 621
Query: 184 tgtcaacatgaggggtgagaagtctcagtcatctatcatctgtattctagtgggttgcta 243
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 tgtcaacatga-gggtgagaagtctcagtcatctatcatctgtatgctagtgggttgcta 562
Query: 244 tcaggtcattgggtaagggactgttttggggacaagataaccctttctgttaccaggaaa 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tcaggtcattgggtaagggactgttttggggacaagataacccttcctgttaccaggaaa 502
Query: 304 ttaccctcaggtatttcatgttgctctgcagaaacagccaacccttggcttataaagact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaccctcaggtatttcatgttgctctgcagaaacagccaacccttggcttataaagact 442
Query: 364 ggagtgagcttttccttaaaattgggatgcaggaccaggaataaccatatcaatctttaa 423
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagtgagcttttccttaagattgggatgcaggaccaggaataaccatatcaatctttaa 382
Query: 424 ccttttggagggaggcatgtgtcatg 449
||||||||||||||||||||||||||
Sbjct: 381 ccttttggagggaggcatgtgtcatg 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 851
Length adjustment: 10
Effective length of query: 442
Effective length of database: 841
Effective search space: 371722
Effective search space used: 371722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_f03.g1 MSMg01no095_f03.g1 CHROMAT_FILE:
MSMg01no095_f03.g1 PHD_FILE: MSMg01no095_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:18 2005
(288 letters)
>mm_chr1_168929461_168930147
Length = 687
Score = 532 bits (275), Expect = e-155
Identities = 284/287 (98%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 1 atctgtcctaactaaagactcacccaggcagtcttgtgtggcctgttaccaggagttcac 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atctgtcctaactaaagactcacccaggcagtcttgtgtggcctgttag-aggagttcac 259
Query: 61 acgtgagtaccagatccagcaaatgctcaatgatcgtgaggggaaaaaaggttaaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acgtgagtaccagatccagcaaatgctcaatgatcgtgaggggaaaaaaggttaaaagaa 319
Query: 121 gctgctggctctgaactatgagagaagacacgtaattaaaaaaaatcatctcttaaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctgctggctctgaactatgagagaagacacgtaattaaaaaaaatcatctcttaaatat 379
Query: 181 tcttcctatttgacacccgagatcacaataacacacacgtggcagatacacggaatggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcttcctatttgacacccgagatcacaataacacacacgtggcagatacacggaatggaa 439
Query: 241 tgtgcaggccatttctggcgtcagtttccatcgggagagagcggaga 287
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtgcaggccatctctggcgtcagtttccatcgggagagagcggaga 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
