BAC Information

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BAC

Clone NameMSMg01-095F19
Chromosome1 (Build37)
Map Location 123,436,190 - 123,436,481
singlet/doubletsinglet
Overlap genenone
Upstream geneEn1, AI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656
Downstream geneDdx18, LOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095F19.T7 (MSMg01no095_f19.b1)MSMg01-095F19.TJ (MSMg01no095_f19.g1)
ACCAG312294AG312295
length666861
length of high quality
(start - end)
293 (46 - 338)---
definitionCHROMAT_FILE: MSMg01no095_f19.b1 PHD_FILE: MSMg01no095_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:21 2005CHROMAT_FILE: MSMg01no095_f19.g1 PHD_FILE: MSMg01no095_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATCAAGAGAACCGCGGATTCCTGAGACTACGCAAAGAGGATTC
TTCACTACCCTAAACTCCGCCCAAAGATACTTACCCACCCTGGAAATCCC
TATTGCTTTCCAGAATCTATCTATATATAGCCCTTGCTTAACCCCGAATA
AAGTTGAGCTGCCTCTCTGAAGCGGATCCCGGAAGAACTCAAAGGGCTTC
CAAACTCTGGTCTTCAACTGGGTTCCCTTTGTCCTTGTAGGCAGTGCAGA
GAAGGGAGGACCATAGAGCCTACATGGAAGAAGGAAAGAACTGACACTTA
TAAGTTAGTTTTCTTCTGATCACATAGGCTGTGTGTGTGCGTGCGCGCGT
GTGTAGAAAGAGACAAAGAGTAATTAAATATAAACATTTTCAGAACCAAT
CCCACATTTATCTCTAATGTAGTTCTGATGGAGGCGGAGGCGTCTGGTTA
ACGTAGACTATTTGAAACCATCTTCATACTTTGACACTTATGGGACCACT
AGTATTGCTGCGACCGTGAACATGACTAGTTTTGAGTGTGTGTGAGTGTG
TGTGTGTTTGCCTCACTTTCCCACTCTTTAATACACTCCCCCTTTTTCCA
CCCCCTCTCCCTCCTCCTAACAATCCCTTTTCCCCCACCCCAACCATACC
ACCCACCTCCTCTCCT
CCCCCCCCCCCCCNNNNCNNNNNNCCNNCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGGGACCNNNNGGGGGGGCAGAAGGGGNNGGCNGGN
NGGNGNCGGATACAAAGAAGGGGGGNNGANNNNNNGNNGGTGCGGAAAAA
GGGGGNNNGGGGNNNGNNGGNNNNNNGGNNGNAGNGGGGGNGGGGTTTGG
GCGGAAAAGAAGAGGGGNNNGNNNGGGGGGAGGGAGGGGGGGGNGGGGGA
GGGGGGGGGGGGGGGGGAGAGGGGGAGGGGGGGGGAGGGGGGGGGGAAGG
GAGGGGGGGGGGGGAGGAGGGAAGGGAGGAGGGAGGGGGTGGAAGTNGGG
GGGAGAGGGGGGGGGGGGGAGAAGGAAAGGGGGGGAAAAAAAAGGGGGAG
GAGNGGGGGGGGTTTGTGGGGGGAGGGGGGGGGGGGGGGGGGGGGGNNAA
TTTTTTTTTTTTTCCCCCCCCGCCGGGGGGGGGGAGGGGGAAGAGGGGGG
GGGAGAGGAAGGGGGGGAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGG
GGGGGCCCCGCCAAAGAAGGAAGGAGGGGGGAGGGGGGGGCGAAAGGGGG
GGGAGAAGGGGGGGGGGGGAGGAAGGGGGAAGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGAGGGGAGAGAGGGGGGGGGAGGGGGGGCGGGGGGGGGG
AAGGAAAGGAGGGAGGGGGGGGGGAGGGGAAAAGGAGGGGGGGAGAGGGG
AGGGGGGGGGGGGGGGGCAGGGGAAGGGGGAGGGGGGGGGGGGGGGGGGG
GGGTGAGAGGGCGGGGGGAGGGGGGGGGAGAGAGGGGCGGGGGGGGGGAG
GGGGGGAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_f19.b1 MSMg01no095_f19.b1 CHROMAT_FILE:
MSMg01no095_f19.b1 PHD_FILE: MSMg01no095_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:21 2005
         (293 letters)



>mm_chr1_123435863_123436555
          Length = 693

 Score =  513 bits (265), Expect = e-150
 Identities = 286/293 (97%), Gaps = 2/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   attcttcactaccctaaactccgcccaaagatacttacccaccctggaaatccctattgc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 619 attcttcactaccctaaactccgcccaaagatacttacccaccctggaaatccctatcgc 560

                                                                       
Query: 62  tttccagaatctatctatatatagcccttgcttaaccccgaataaagttgagctgcctct 121
           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 559 ttcccagaatctatctatatatagcccttgcttaaccccaaataaagttgagctgcctct 500

                                                                       
Query: 122 ctgaagcggatcccggaagaactcaaagggcttccaaactctggtcttcaactgggttcc 181
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 ctgaagcggatcccggaagaactcaaagggcttccaaactctgttcttcaactgggttcc 440

                                                                       
Query: 182 ctttgtccttgtaggcagtgcagaga-agggaggaccatagagcctacatggaagaagga 240
           |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 439 ctttgtccttgtaggcagtgcagagaca-ggaggatcatagagcctacatggaagaagga 381

                                                                
Query: 241 aagaactgacacttataagttagttttcttctgatcacataggctgtgtgtgt 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagaactgacacttataagttagttttcttctgatcacataggctgtgtgtgt 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)