BAC Information

Click to search

BAC

Clone NameMSMg01-095G12
Chromosome1 (Build37)
Map Location 67,065,066 - 67,065,355
singlet/doubletsinglet
Overlap geneLancl1
Upstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192
Downstream geneCps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095G12.T7 (MSMg01no095_g12.b1)MSMg01-095G12.TJ (MSMg01no095_g12.g1)
ACCAG312326AG312327
length706691
length of high quality
(start - end)
---291 (58 - 348)
definitionCHROMAT_FILE: MSMg01no095_g12.b1 PHD_FILE: MSMg01no095_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:25 2005CHROMAT_FILE: MSMg01no095_g12.g1 PHD_FILE: MSMg01no095_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGT
CCCTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGAGTGAGACTGAAGAATACCGCCTTAGAGAGCTCAGATGCCA
ACTGGCTTTAACACATAAGAAAGGTAGGTTCTATGTTTCAGGCTTAAGTA
AGCATCCAACAGTTCTGCACTGGCCAATCATGTATCAGCAAACTGCAATG
GAAGAAACTTACTTTGCATAGACTTTTAGAGAAATAATTGCTTTGTATCC
TCTACCATTCTGAACAAGCTTGGTGACAGTTCTTTAAAATTCATATTTTA
ATTGTATTTTTTGTACACCCATGAGTTTAATGAAGGTTCAAGAACATTTT
TTTCCCCCCACCCCCGCATGGGAATCTTATCAGCTGCTGTCCCCCACCCT
CCGCAGCCATTGATAAATGATAAGATGAGCGGGGGTGCTGCAGCCTGTTA
CTCCTTCCCTCTCCATGAAAGGATGCTGGCAAGACTGATGTGCAGGTCTC
TCGTAGGTAATCACAGCTGCTAAGAGTTCAAGGGAGCAATGGCTATGCCA
CACCCACAGGGCAGGATGCCACACCCACAGGGAAGGATTCCAGCGGTTTC
CCTAACCTCTCCTTTCTAGGTCTCTCGATATTGTCTGAGACTGTAAGGGT
TGTCTTGAACCCTTTCTCAGGGATAATTGCTTAAAAAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_g12.g1 MSMg01no095_g12.g1 CHROMAT_FILE:
MSMg01no095_g12.g1 PHD_FILE: MSMg01no095_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:25 2005
         (291 letters)



>mm_chr1_67064866_67065556
          Length = 691

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtgagactgaagaataccgccttagagagctcagatgccaactggctttaacacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtgagactgaagaataccgccttagagagctcagatgccaactggctttaacacata 260

                                                                       
Query: 61  agaaaggtaggttctatgtttcaggcttaagtaagcatccaacagttctgcactggccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggtaggttctatgtttcaggcttaagtaagcatccaacagttctgcactggccaa 320

                                                                       
Query: 121 tcatgtatcagcaaactgcaatggaagaaacttactttgcatagacttttagagaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgtatcagcaaactgcaatggaagaaacttactttgcatagacttttagagaaataa 380

                                                                       
Query: 181 ttgctttgtatcctctaccattctgaacaagcttggtgacagttctttaaaattcatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttgtatcctctaccattctgaacaagcttggtgacagttctttaaaattcatatt 440

                                                             
Query: 241 ttaattgtattttttgtacacccatgagtttaatgaaggttcaagaacat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattgtattttttgtacacccatgagtttaatgaaggttcaagaacat 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)