CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
GTAACATAGAAAACAGTAACATGGTTTAGAAACAAAACTGTACCCCAACT
GTCTGTCTACTATTTCACCTGCCCTATGATCTACAAGGATTGATACATCC
TTTTGAAATATATTCTTATATATGAAAAATATCTATGGAAAAGAGTCATG
GTAAATATTAAATAACCAATGATCTATGTTTGGTTAGTGGCAGCCAGATG
TTGGTTCTTTGGCTTCATCACTTGGCAATAACTCTGTATTACAATTCAAG
TTAAATAAAATGCATTCCAAATAAAAATAAAATAGCACCTAGAGCATTGC
TTCAAAAACTATCATTAACTGTATGGAATAAGTGTTAGACTTATAGTTAG
ACTTATAGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTGGGGCCTTCAAGACAGGGTTTCTCTGCATAGCCCTGGTTGTCCTGG
AACTCACTTTGTAGACCAGGCTGGTCTCCAAATCAGAAATCCACCTGTCT
CTGGTTCCCAAGTGCTGGGATTTATTGCGTGCGCTCCCATGCCCTCCCTA
AACTTTTAAATTTTGATTTTTTGTGACCCTCTTCTTTATATATCCTAAGT
AATTTTAAAATTCCCATGAACTATGACCCCCTACATGGGTG

AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTCGCACCTGCGTACAAGGCTTGTT
TACTAGTTAGGCACAGCAGAGGCCCGCGCCATCTTATAATGGCGATTGCT
CGCAGCACACATGGCTCTCCTCAGAGATTACTGGCAGTATGCACGCAATT
GCTCTCAGCACGGCTCTCCACACTTCACAATATTCACAAATAATATAAAA
TACCTTTGTGTGACTCTAAGGAAATGAAAGATCTGTATGATAAGAACTTC
ATGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCT
CCCATGCTCATGGATTGGCACCCAACAATATAGTAAAAATGGCTGTGTTG
CCAAAAGCAATCTACATATTCAATGAAATCCCCATCAAAATTCCGACTCA
ATTCTTCAACGAATTAGAAAGGACAATTTGCAAATTCATCTGGAATAACA
AAAAAACTATGATAGAATAAATTCTTCTCAATGATAAAAGAAGCTTTAAT
GGAATCACCATACCTGATCTTAAGCTGTACTACAGAGCAACTGTGATAAA
AACTGCATGGTACTGGTACAGTGACAAACAGGTAGATCAATGGAATAGAA
TTGAAGACCCAGAAATGAATTCACACCCCTATGGTCACTTGATTTTGACA
TGGGAAA

Query= MSMg01no095_i20.b1 MSMg01no095_i20.b1 CHROMAT_FILE:
MSMg01no095_i20.b1 PHD_FILE: MSMg01no095_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:36 2005
         (440 letters)



>mm_chr1_103154440_103155281
          Length = 842

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/403 (98%), Gaps = 4/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattc-gt-aacatagaaaacagtaacatggtttagaaacaaaactgtaccccaactgt 64
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattcagtaaacatagaaaacagtaacatggtttagaaacaaaactgtaccccaactgt 514

                                                                       
Query: 65  ctgtctactatttcacctgccctatgatctacaaggattgatacatccttttgaaatata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctgtctactatttcacctgccctatgatctacaaggattgatacatccttttgaaatata 454

                                                                       
Query: 125 ttcttatatatgaaaaatatctatggaaaagagtcatggtaaatattaaataaccaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttcttatatatgaaaaatatctatggaaaagagtcatggtaaatattaaataaccaatga 394

                                                                       
Query: 185 tctatgtttggttagtggcagccagatgttggttctttggcttcatcacttggcaataac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tctatgtttggttagtggcagccagatgttggttctttggcttcatcacttggcaataac 334

                                                                       
Query: 245 tctgtattacaattcaagttaaataaaatgcattccaaataaaaataaaatagcacctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tctgtattacaattcaagttaaataaaatgcattccaaataaaaataaaatagcacctag 274

                                                                       
Query: 305 agcattgcttcaaaaactatcattaactgtatggaataagtgttagacttatagttagac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agcattgcttcaaaaactatcattaactgtatggaataagtgttagacttatagttagac 214

                                                      
Query: 365 ttataggntttttttttttttttttttttttttttt--ttttt 405
           ||||||| ||||||||||||||||||||||||||||  |||||
Sbjct: 213 ttataggtttttttttttttttttttttttttttttggttttt 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 842
Length adjustment: 9
Effective length of query: 431
Effective length of database: 833
Effective search space:   359023
Effective search space used:   359023
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)