Query= MSMg01no095_k03.b1 MSMg01no095_k03.b1 CHROMAT_FILE:
MSMg01no095_k03.b1 PHD_FILE: MSMg01no095_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:43 2005
(662 letters)
>mm_chr1_47370441_47371502
Length = 1062
Score = 1236 bits (639), Expect = 0.0
Identities = 654/659 (99%), Gaps = 2/659 (0%)
Strand = Plus / Minus
Query: 5 gaattctag-aaaatccatgttaagatgcattggttcttttagttttctcactacagttg 63
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattctagaaaaatcaatgttaagatgcattggttcttttagttttctcactacagttg 803
Query: 64 gtctgacacaagaaaaacagtctgaaggttgttactacccttgagttaaacaggaaagaa 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atctgacacaagaaaaacagtctgaaggttgttactacccttgagttaaacaggaaagaa 743
Query: 124 aatataaacatgtctgcttctggcatacaaatcgagttgacctaaagacatttagaaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aatataaacatgtctgcttctggcatacaaatcgagttgacctaaagacatttagaaaat 683
Query: 184 gaccaggtggaaaatctgagcagaggtaaagaagggacatttaggaacagagaaaaacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaccaggtggaaaatctgagcagaggtaaagaagggacatttaggaacagagaaaaacac 623
Query: 244 aaagagctcttgctctcagctcagccaagaggcaatgggaaaccaggatcaaattcagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaagagctcttgctctcagctcagccaagaggcaatgggaaaccaggatcaaattcagag 563
Query: 304 caggagactggcacacccaaaaaagtaagtcactagccccaaacctaactttgagatgtg 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caggagactggcacaaccaaaaaagtaagtcactagccccaaacctaactttgagatgtg 503
Query: 364 caagatctgagtcatttactactcaacatcccatgaagaaaatgcagagtaatgacaaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caagatctgagtcatttactactcaacatcccatgaagaaaatgcagagtaatgacaaaa 443
Query: 424 gttttcaaactctaaaatacttcagtcacttgctatttgatatgtataagaatcaaactt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gttttcaaactctaaaatacttcagtcacttgctatttgatatgtataagaatcaaactt 383
Query: 484 atttgctctttttttcagggctttcaaatgtctaatacatgagaaagggagcaagctatg 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttgctc-ttttttcagggctttcaaatgtctaatacatgagaaagggagcaagctatg 324
Query: 544 gaagatacagctgaaagatcatggcacagcgtgatcaagagacttgtcagaggagtcagg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaagatacagctgaaagatcatggcacagcgtgatcaagagacttgtcagaggagtcagg 264
Query: 604 tccagttccaggccatgtgtgaccatcacacagtggtgtctctacttttcatgaggttc 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccagttccaggccatgtgtgaccatcacacagtggtgtctctacttttcatgaggttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_k03.g1 MSMg01no095_k03.g1 CHROMAT_FILE:
MSMg01no095_k03.g1 PHD_FILE: MSMg01no095_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:43 2005
(599 letters)
>mm_chr1_47247601_47248604
Length = 1004
Score = 1120 bits (579), Expect = 0.0
Identities = 596/604 (98%), Gaps = 5/604 (0%)
Strand = Plus / Plus
Query: 1 tctgccagatactgtagtctgctgactagctgcttaggaagtctgaaaattggtctgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgccagatactgtagtctgctgactagctgcttaggaagtctgaaaattggtctgtca 260
Query: 61 acctgtgatggacaactgtataatgtacttcctgggcaaactcaattagagatacagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgtgatggacaactgtataatgtacttcctgggcaaactcaattagagatacagctt 320
Query: 121 tgggtgggaagaggccagaggaagtgattagtgctcataaaggcattatcactccaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtgggaagaggccagaggaagtgattagtgctcataaaggcattatcactccaataa 380
Query: 181 ttgtgtaatgaagagccagcgagtgcttgcataactgtggaacaagcagaaagtgcttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgtaatgaagagccagcgagtgcttgcataactgtggaacaagcagaaagtgcttat 440
Query: 241 taaacaatttctttggtgttaatcaaagactgcttttctcacagtagatcattagttgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaacaatttctttggtgttaatcaaagactgcttttctcacagtagatcattagttgtg 500
Query: 301 attttatttattccaagtatcaatattatcttagatttctctactgtaactctaaagact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttatttattccaagtatcaatattatcttagatttctctactgtaactctaaagact 560
Query: 361 ttaaacaatgatttttttt--ggttgttctttaatagttttgtttttacaattatctaag 418
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaacgatgattttttttttggttgttctttaatagttttgtttttacaattatctaag 620
Query: 419 cagatcattttaaccttgggagatcacaaaaatgttaactcagaaaaagttaatctgtgt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagatcattttaaccttgggagatcacaaaaatgttaactcagaaaaagttaatctgtgt 680
Query: 479 acagaagaaagcctctcanagccagagctaagactcatt---gctgcatgtgatagtttg 535
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 681 acagaagaaagcctctcaaagccagagctaagactcattattgctgcatgtgattgtttg 740
Query: 536 ggtagtcagtgctgggcaacagcactcacctctaggctgggctgctcattgtgcccctta 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtagtcagtgctgggcaacagcactcacctctaggctgggctgctcattgtgcccctta 800
Query: 596 ccta 599
||||
Sbjct: 801 ccta 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1004
Length adjustment: 10
Effective length of query: 589
Effective length of database: 994
Effective search space: 585466
Effective search space used: 585466
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
