BAC Information

Click to search

BAC

Clone NameMSMg01-095K19
Chromosome1 (Build37)
Map Location 158,819,037 - 158,819,474
singlet/doubletsinglet
Overlap geneRalgps2
Upstream geneCep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Angptl1
Downstream gene4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095K19.T7 (MSMg01no095_k19.b1)MSMg01-095K19.TJ (MSMg01no095_k19.g1)
ACCAG312532AG312533
length710778
length of high quality
(start - end)		505 (45 - 549)234 (201 - 434)
definitionCHROMAT_FILE: MSMg01no095_k19.b1 PHD_FILE: MSMg01no095_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:46 2005CHROMAT_FILE: MSMg01no095_k19.g1 PHD_FILE: MSMg01no095_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTCTACTCGCATACATGCATCAGAACATTTTGAATGGTGGTGTA
AACTAGACATATGTATGTGTTTCATTTACATTCAGTATGATATGGAAATA
ATAATCATAATTTTGAAGCAGCAAGGCAAAAGTGACATTTTTGAGCTCTC
TGTACCAGTTGTGTTTACTTCTTTTATATTAAAAAGAGTACGTATATTCT
GCAGCCTACATTTATAATTAAAAACGATTCAGTTATTTTTATTTTATGTG
GATGGGTGTATTGCCTGAAACCACGTCTGTGTAACACTTGAGTGTGTGGC
GCCCACAGAGGCCAGAAGAGGGCATATGATCCCCTGGAATTGGATTTACA
GACAGCTGTGAGCCACCATGTAGCTGTTAGTTAGTTAAACCCTGATCTTC
CATAAGATCCAGCAAGTGTTCTTAACTGCTAAGCCATCTCTCCAGCCCAC
AGTGGTTCATTTCAAGTAAAGGGGATTAGTATATATATATATTTTTTTAA
GCTGCTTTATCTATTGAATACATAATATTGCTCCACTTTGTATTCCTTTT
CTTTTACCTTTGCACCGATCTAAATCTTCCCCATTTATCTGCCGCCTTCA
ACTTCTCAAAACCCATTCATTGTCAGACCCCAGTATGCGAAGCCCCTCTC
ACCTTCTCTT

NNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNTTTTNNNNNNNTTNN
NNNNTTTNNTTGTTGATTTCTTTCCTCGATGATXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
GGTGTTAAGTAAAAACTCAGGGAAACCTGGCAGTGACTCAGACGACCTGA
GAATTAGGAAAACAGAAGAATCTCCAAGTCTTCCCGAGTGGGATAAGCCA
GTGGCCCAAGCTTTGGAAGCCTCTGGAAAGCGCCTCAGCAGGCAGCAGGC
AGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCA
GCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAG
CAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCTTGCAGCAGGCACC
AGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCC
CACACCACCTGCCCAGCTTGGGAAGCGTCCTCTGCCCGTGGTTCATGTTA
GAGACGCTAACTGATGCGCACAACAGGCTCTAGATGCTTCCATCTGAAAG
GAAACGCCGCGTACTCAACAGGTCAAATGCAAACTTTCCCCAGCCCCATG
CACATCAGAATTTCCAGGACCATTACACACCAGGGAGAACAGAACCAGGC
TGCTGAGGAGCCTCAGTCATCCCAATGCCAAGGGCTTCCCCAGGGTTAGT
CCTCCTCCCCAATTCTGCCGTTGCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_k19.b1 MSMg01no095_k19.b1 CHROMAT_FILE:
MSMg01no095_k19.b1 PHD_FILE: MSMg01no095_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:46 2005
         (505 letters)



>mm_chr1_158819037_158819941
          Length = 905

 Score =  801 bits (414), Expect = 0.0
 Identities = 432/438 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttctactcgcatacatgcatcagaacattttgaatggtggtgtaaactagac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaattcagttctactagcatacatgcatcagaacattttgaatggtggtgtaaactagac 379

                                                                       
Query: 65  atatgtatgtgtttcatttacattcagtatgatatggaaataataatcataattttgaag 124
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 378 atatgtatgtgtttcatttacattcagtatgatatggagataataatcataaatttgaag 319

                                                                       
Query: 125 cagcaaggcaaaagtgacatttttgagctctctgtaccagttgtgtttacttcttttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 318 cagcaaggcaaaagtgacatttttgagctctctgtaccagttgtgtttatttcttttata 259

                                                                       
Query: 185 ttaaaaagagtacgtatattctgcagcctacatttataattaaaaacgattcagttattt 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttacaaagagtacgtatattctgcagcctacatttataattaaaaacgattcagttattt 199

                                                                       
Query: 245 ttattttatgtggatgggtgtattgcctgaaaccacgtctgtgtaacacttgagtgtgtg 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttattttatgtggatgggtgttttgcctgaaaccacgtctgtgtaacacttgagtgtgtg 139

                                                                       
Query: 305 gcgcccacagaggccagaagagggcatatgatcccctggaattggatttacagacagctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gcgcccacagaggccagaagagggcatatgatcccctggaattggatttacagacagctg 79

                                                                       
Query: 365 tgagccaccatgtagctgttagttagttaaaccctgatcttccataagatccagcaagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  tgagccaccatgtagctgttagttagttaaaccctgatcttccataagatccagcaagtg 19

                             
Query: 425 ttcttaactgctaagcca 442
           ||||||||||||||||||
Sbjct: 18  ttcttaactgctaagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |