Query= MSMg01no095_m15.b1 MSMg01no095_m15.b1 CHROMAT_FILE:
MSMg01no095_m15.b1 PHD_FILE: MSMg01no095_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:55 2005
(652 letters)
>mm_chr1_113729031_113730082
Length = 1052
Score = 1176 bits (608), Expect = 0.0
Identities = 640/656 (97%), Gaps = 9/656 (1%)
Strand = Plus / Plus
Query: 6 aattccttcaagcttgcctaaattacttctgaatgtttcatcgtttgatcagtgtatctt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aattccttcaagcttgcctaaattacttctgaatgtttcatcgtttgatcagtgtatctt 256
Query: 66 tctaagactgacattcctatgtgaatgtttcaaaatactagcaaataagatagctattat 125
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctaagactgaaattcccatgtgaatgtttcaaaatactagcaaataagatagctattat 316
Query: 126 ctcctaggaatgatcttgttac---------atatatcaattagtgagtaaaaggagatt 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 317 ctcctaggaatgatcttgttacttagccaacatatatcaattagtgagtaaaaggagatt 376
Query: 177 tgccatactaaatttttcactgtcattcataggaatggctgaaaatatgcatataaaagt 236
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 377 tgccatactaaatttttcactgtcattcataggaatgactgaaaatatgcatataaaagt 436
Query: 237 ataacacataaatcctttattccattcatactcatacttttaattgttaatagttgcagc 296
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 437 ataacacataaatcctttattccattcatattcatacttttaattgttaatagttgcagc 496
Query: 297 acaacacatgttgtaccaattagatttctatatagactgcatactgcctagtctaatcca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acaacacatgttgtaccaattagatttctatatagactgcatactgcctagtctaatcca 556
Query: 357 caagcagtcttattttataagttatttatttaatgctattttatgtatattggtgtgagg 416
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 557 caagcagtcttattttataagttatttatttaatgttattttatgtatattggtgtgagg 616
Query: 417 caatcccacaggactggagctacagacagctgtgaactgccatatggattctgggaattt 476
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caatcccatgggactggagctacagacagctgtgaactgccatatggattctgggaattt 676
Query: 477 aagtgaagtcttttggaagaacagccagtgctcttaatcactgagaaattttcaatcctt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aagtgaagtcttttggaagaacagccagtgctcttaatcactgagaaattttcaatcctt 736
Query: 537 ccttctctagaatatttgatataaatatggcaatatatttaattgctaaagctaataata 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccttctctagaatatttgatataaatatggcaatatatttaattgctaaagctaataata 796
Query: 597 aaaaggcttctgatgtatttctttcctttacttcaattttattttgtatttgtcat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaaaggcttctgatgtatttctttcctttacttcaattttattttgtatttgtcat 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_m15.g1 MSMg01no095_m15.g1 CHROMAT_FILE:
MSMg01no095_m15.g1 PHD_FILE: MSMg01no095_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:55 2005
(558 letters)
>mm_chr1_113865970_113866929
Length = 960
Score = 1025 bits (530), Expect = 0.0
Identities = 552/560 (98%), Gaps = 2/560 (0%)
Strand = Plus / Minus
Query: 1 agtttaattaactgtatagagaaggcatcagtggtaatgaaagaaaatcaagttttctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agtttaattaactgtatagagaaggcatcagtggtaatgaaagaaaatcaagttttctaa 507
Query: 61 atgtctttataggtaaattatgaaccattcaatacatttgttgaagtaatttggtgtgat 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 506 atgtctttataggtaaattatgaaccattcaatacttttgttgaagtaatttggtgtgat 447
Query: 121 tttagagtccccttcatacatgagcaaagttatataaagttagaaatatatttcttgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttagagtccccttcatacatgagcaaagttatataaagttagaaatatatttcttgaat 387
Query: 181 ttgatagtgttaagtataaattatatgtaagttaggctcctaattatatttataagagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgatagtgttaagtataaattatatgtaagttaggctcctaattatatttataagagtt 327
Query: 241 agactactaatattgttttgaaggctaaataattaataat--tcttccaaggaaatgggt 298
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 326 agactactaatattgttttgaaggctaaataattaataattctcttccaaggaaatgggt 267
Query: 299 gcaaattgtgtataaaccctgggaaatgttttcactttagttatgcccaatatttagtat 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 gcaaattgtgtataaaccctgggaaatcttttcactttagttatgcccaatatttagtat 207
Query: 359 ctaggttgttgtggatagccctggggctaattatatttgatggtacttcagttctcctgt 418
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 206 ctaggttgttgtggatagccctggggctaattatatttgatgctacttcagttctcctgt 147
Query: 419 gagtggttatgaacaaggaatgagtcagcactcaggtgatttcctataaacctgctttcc 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 146 gagtggttatgaacaaggaatgagtcagcactcaggtgatttcctataaacctgcttttc 87
Query: 479 accttaaaatttgtaaaataaaggagagctgatgattgaacagataatagggaaggtgta 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 86 accttaaaatttgtaaaataaaggagagctgatgattgaacagataaaagggaaggtgta 27
Query: 539 gtagaaggtagagaaagaga 558
|||||||||||||||||||
Sbjct: 26 ttagaaggtagagaaagaga 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 960
Length adjustment: 10
Effective length of query: 548
Effective length of database: 950
Effective search space: 520600
Effective search space used: 520600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
