BAC Information

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BAC

Clone NameMSMg01-095M16
Chromosome1 (Build37)
Map Location 195,378,571 - 195,467,234
singlet/doubletdoublet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095M16.T7 (MSMg01no095_m16.b1)MSMg01-095M16.TJ (MSMg01no095_m16.g1)
ACCAG312622AG312623
length709714
length of high quality
(start - end)		654 (46 - 699)406 (76 - 481)
definitionCHROMAT_FILE: MSMg01no095_m16.b1 PHD_FILE: MSMg01no095_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:55 2005CHROMAT_FILE: MSMg01no095_m16.g1 PHD_FILE: MSMg01no095_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,466,585 - 195,467,234)(195,378,571 - 195,378,965)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCCCAGTGTCTGTCCCACAGATTGCTTTCAGCTTCCAGTAGCCA
ACTTTGATTTAAGGACTCGGGTGAGGACAGAATGAGAAGTCATTGAGGCC
AGGAGGAGGAGAGAGGGTGGCGGGAGAAACGTGCAGGATAAAACAATTTC
CACCTGCTGACAATATATAGATGGTGAACTCAGAAGTTTTCCACCATAAT
AAACAAGAAGAAGAAGTGGAAGAAGTGGGCATATAACTTTATGGCCTGTG
AAATTGAATCACCTCTCGCGGATCTCTTTACCTGTTGGTGGACAAAGAGT
CGCTTCCTCATCCCAGGCAACCACGGGTCGTAAAAGCCTCTGAGACGCAA
GGACTGGGCCTGTCTGATTAGAATCCAGAAGACCTTGGTTTCCAAGCCAG
ACTTTATATATTTGAGTTTCATCCACTGCAAGCTGCAAGCACTGTGAATT
ACAGAGCTTCCTGAGCTGAGCACTGCATCTCGCCATTGTCATAAACACCA
AGAGAGAAGCAAGGCCACCATCTTAAATCAGCAGCTTGAGAGAGAAAGCA
AGTAGAGACACAGCTGGGCATGGGAGACAGGTGGGGACCCCCCCTAGTGA
GCCCCCCCAATAGCAGGACAGTAAAAGCCTGAATTTGTTCGCCTTTCCTC
TTTTCTGAA

CAATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCAGAGCTGGGTGGGTAGGAG
AGGATAATGAGAGGCAAACTGCATCGCTGGCTTTTTTTAATCTATAAAAA
AATTCAGGCTGGAAGATGTTCACATCCTAATGTTGGGTGTACCTCTAATG
AAGAAGAGAGTCATCTGAGTGAAAGATAAGAAATAGGGTCAAAAGTCTCT
TCTAAAGTGCAACTCTGCTAGTCCTTGCAGGGCATTAATATTTCTATTGA
GTTATGTTAATTATTTATTTGACTTTCCGGGAGAGGAGCCTGTTAGTGTC
TCTAGGTTCTATATCTGGATGGATTCCTGGAGAAACTCAACAGCATGACA
CTATTAGTTTGAAAGTTTTTGTGGTAGTTTTCTTATTGGCATGAGGTAAG
GGTGTGTGTGTGTGTGTGTGCACTCACTCTGTGCATGAGTGTGTGTGTGT
GTGCGTGTGTGTGAGTGTGTGCACTTGATGTGTGTGTTTTTGTGGCTCGA
ATATGTGTGTACTTGCTTATTTTATTTTTTTATTACTTCCCTTTGTTGTG
TTTTCCATTCTACTATAATTTTTCTACATTTTGCCTTACTTCCTTTCTAT
CTCTACTCTATCTCCTTTTAACTTATCAATCCGTATTTCCTATTTTTTTC
CTCCCTCCTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_m16.b1 MSMg01no095_m16.b1 CHROMAT_FILE:
MSMg01no095_m16.b1 PHD_FILE: MSMg01no095_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:55 2005
         (654 letters)



>mm_chr1_195466381_195467434
          Length = 1054

 Score = 1180 bits (610), Expect = 0.0
 Identities = 640/650 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcccagtgtctgtcccacagattgctttcagcttccagtagccaactttgatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaattcctcccagtgtctgtcccacagattgctttcagcttccagtagccaactttgatt 795

                                                                       
Query: 65  taaggactcgggtgaggacagaatgagaagtcattgaggccaggaggaggagagagggtg 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 794 taaggactcgggtgaggacagaatgagaagtcatcgaggccaggaggaggagagagggta 735

                                                                       
Query: 125 gcgggagaaacgtgcaggataaaacaatttccacctgctgacaatatatagatggtgaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gcgggagaaacgtgcaggataaaacaatttccacctgctgacaatatatagatggtgaac 675

                                                                       
Query: 185 tcagaagttttccaccataataaacaagaagaagaagtggaagaagtgggcatataactt 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tcggaagttttccaccataataaacaagaagaagaagtggaagaagtgggcatataactt 615

                                                                       
Query: 245 tatggcctgtgaaattgaatcacctctcgcggatctctttacctgttggtggacaaagag 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 614 tatggcctgtgaaattgaatcacctctcccggatctctttacctgttggtggacaaagag 555

                                                                       
Query: 305 tcgcttcctcatcccaggcaaccacgggtcgtaaaagcctctgagacgcaaggactgggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcgcttcctcatcccaggcaaccacgggtcgtaaaagcctctgagacgcaaggactgggc 495

                                                                       
Query: 365 ctgtctgattagaatccagaagaccttggtttccaagccagactttatatatttgagttt 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 494 ctgtctgattagaatccagaaggccttggtttccaagccagactttatatatttgagttc 435

                                                                       
Query: 425 catccactgcaagctgcaagcactgtgaattacagagcttcctgagctgagcactgcatc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 434 catccactgcaagctgcaagcactgtgaattacagagcttcctgagctgagcgctgcatc 375

                                                                       
Query: 485 tcgccattgtcataaacaccaagagagaagcaaggccaccatcttaaatcagcagcttga 544
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcgccattgtcataaacaccaggagagaagcaaggccaccatcttaaatcagcagcttga 315

                                                                       
Query: 545 gagagaaagcaagtagagacacagctgggcatgggagacaggtggggaccccccctagtg 604
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 314 gagagaaagcaagtagagacacagctgggcatgggagacaggtggagaccccccctagtg 255

                                                             
Query: 605 agcccccccaatagcaggacagtaaaagcctgaatttgttcgcctttcct 654
           |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agccccaccaatagcaggacagtaaaagcctgaatttgttcgcctttcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no095_m16.g1 MSMg01no095_m16.g1 CHROMAT_FILE:
MSMg01no095_m16.g1 PHD_FILE: MSMg01no095_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:55 2005
         (406 letters)



>mm_chr1_195378371_195379176
          Length = 806

 Score =  748 bits (387), Expect = 0.0
 Identities = 393/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagccagagctgggtgggtaggagaggataatgagaggcaaactgcatcgctggctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagccagagctgggtgggtaggagaggataatgagaggcaaactgcatcgctggctttt 260

                                                                       
Query: 61  tttaatctataaaaaaattcaggctggaagatgttcacatcctaatgttgggtgtacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaatctataaaaaaattcaggctggaagatgttcacatcctaatgttgggtgtacctc 320

                                                                       
Query: 121 taatgaagaagagagtcatctgagtgaaagataagaaatagggtcaaaagtctcttctaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgaggaagagagtcatctgagtgaaagataagaaatagggtcaaaagtctcttctaa 380

                                                                       
Query: 181 agtgcaactctgctagtccttgcagggcattaatatttctattgagttatgttaattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgcaactctgctagtccttgcagggcattaatatttctattgagttatgttaattatt 440

                                                                       
Query: 241 tatttgactttccgggagaggagcctgttagtgtctctaggttctatatctggatggatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttgactttccgggagaggagcctgttagtgtctctaggttctatatctggatggatt 500

                                                                       
Query: 301 cctggagaaactcaacagcatgacactattagtttgaaagtttttgtggtagttttctta 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggagaaactcaacagcatgacactattagtttgaaagtttttgtggtagttttctta 560

                                              
Query: 361 ttggcatgaggtaagggtgtgtgtgtgtgtgtgtg 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggcatgaggtaagggtgtgtgtgtgtgtgtgtg 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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