Query= MSMg01no095_n11.b1 MSMg01no095_n11.b1 CHROMAT_FILE:
MSMg01no095_n11.b1 PHD_FILE: MSMg01no095_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:59 2005
(518 letters)
>mm_chr1_190278813_190279729
Length = 917
Score = 878 bits (454), Expect = 0.0
Identities = 495/516 (95%), Gaps = 15/516 (2%)
Strand = Plus / Plus
Query: 5 gaattctcacctgtccc--tagaaggagtgtacgggatgatagcgggaagatggttttgt 62
||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 215 gaattctcacctg--ccaatagaaggaatgtacgggatgatagcgggaagatg------- 265
Query: 63 cgttttttgttttccgcgtaaaatgcgccatttgcaggtatattcagatcagcgagacga 122
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ---tttttgttttccgtgtaaaatgcgccatttgcaggtatattcagatcagcgagacga 322
Query: 123 aagattagcttttatttgcctgaaagcaaagcttaataaccacttcacgtctcttatttc 182
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 323 aagattagcttttatttgcctgaaagcaaagcttaataaccacttcatgtctcttatttc 382
Query: 183 cagtaggtgtttgtgcttctttcccatgtacatgccttaagattaaacatctacataaga 242
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagtaagtgtttgtgcttcttccccatgtacatgccttaagattaaacatctacataaga 442
Query: 243 ctcataggctggacgtcatagaaataagctgaagcaggacttctgtgtagtcaagcctgc 302
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 443 ctcataggctggacgtcatagaaataagccgaagc-ggacttctgtgtagtcaagcctgc 501
Query: 303 actggaaaggaatgaaagttgactacccactatattgatctctctgctctattacttctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actggaaaggaatgaaagttgactacccactatattgatctctctgctctattacttctg 561
Query: 363 tgaactgcagggtgacttgctgtgggtttgtagcccatttaactgttacctcccagtgga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgaactgcagggtgacttgctgtgggtttgtagcccatttaactgttacctcccagtgga 621
Query: 423 gggatggaagcttgccattcaatagcattgtcgtagaaagtcacaaatcaaaataggcat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gggatggaagcttgccattcaatagcattgtcgtagaaagtcacaaatcaaaataggcat 681
Query: 483 ttcgcctcttagaagggagggaacacaagagtggct 518
||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttcgcctcttagaagggagggaacacaagagtggct 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_n11.g1 MSMg01no095_n11.g1 CHROMAT_FILE:
MSMg01no095_n11.g1 PHD_FILE: MSMg01no095_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:59 2005
(489 letters)
>mm_chr1_190413994_190414882
Length = 889
Score = 899 bits (465), Expect = 0.0
Identities = 483/489 (98%)
Strand = Plus / Minus
Query: 1 aagacttcggggctggggaacttggagtcagggagggcacactagctcatttagatgagc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 689 aagacttcggggctggggaacttggagtcagggagggcgcactagctcatttagatgagc 630
Query: 61 aggggtaggatgttaggaaaggtaaattatgtgtgagaaaataacctcccatacacaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aggggtaggatgttaggaaaggtaaattatgtgtgagaaaataacctcccatacacaaga 570
Query: 121 gacattgggccttacagagtcagtgagtagaagaatgttctggaaagaaagatgaatggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gacattgggccttacagagtcagtgagtagaagaatgttctggaaagaaagatgaatggt 510
Query: 181 gggcagaaagcagaggctctgcagactatacccacggtttctgaactgtagtatctctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gggcagaaagcagaggctctgcagactatacccacggtttctgaactgtagtatctctca 450
Query: 241 agctcctcctactgaacagaggtgatgtgaggacacggcctttgactcttttgtcttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agctcctcctactgaacagaggtgatgtgaggacacggcctttgactcttttgtcttctc 390
Query: 301 cgaagtccttagggattattaaagacacccaacaattgccaaattaataaatcacttcat 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgaagtccttagagattattaaagacacccaacaattgccaaattaataaatcacttcat 330
Query: 361 actgtccccaactgcccccacagtcaactttagctgtcactgaatgtggacactttcaac 420
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 329 actgtccccaactgcccccacagtcaactttagctgtcaccgaatgtgaacactttcaac 270
Query: 421 tgattttttttcaaagagttgccttatcttgctctaataagtaaatttttgatggaagtg 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 269 tgattttttttcaaagagttgccttatcttgctctaataagtaaaattttgatggaagtg 210
Query: 481 tgaagaatg 489
|||||||||
Sbjct: 209 tgaagaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
