BAC Information

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BAC

Clone NameMSMg01-095N21
Chromosome1 (Build37)
Map Location 53,622,452 - 53,622,763
singlet/doubletsinglet
Overlap geneLOC100042162
Upstream geneGm553, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095N21.T7 (MSMg01no095_n21.b1)MSMg01-095N21.TJ (MSMg01no095_n21.g1)
ACCAG312680AG312681
length6841,189
length of high quality
(start - end)
318 (18 - 335)---
definitionCHROMAT_FILE: MSMg01no095_n21.b1 PHD_FILE: MSMg01no095_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:01 2005CHROMAT_FILE: MSMg01no095_n21.g1 PHD_FILE: MSMg01no095_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTACCTATTTCGAGAGGATCCGCGGAATTCTTGTAGTCTCCGAACTGATG
TCTGAGCGGACAGTCTAAACAGGTCTGCACTGTGCTTATTCCTTATTACA
GATCTTGTGATTTCCCATTGTTTGAAATTTTGCTTCCTAACCAACTGCAT
TTTTTTCTGATTGATCCTAGGAAAATAATTTAGAAACAAAGATGATCAAT
GCTGGTTTGCGATATGGCTATGAATATCTGGGAAATTCCCCTAGACTAGT
CATAACCCCACTCACAGACCGCTGTTACAGGTAAACCCTGCCAAAGACAC
GGGAGCAATAACTTACACATACACACACACACACACTTTTTCACACACAC
ACACACACACACACACACACACACACCCTAGGCCAGTGATTGAGTTACAG
GTAAGTATTTTTACCTTACATTCTATAAATGGATCCTGTGTCCTTTCCCC
AGTCCCTAAGCCTCCTCTCTGCTGCTTTCCTGTTTTCATCTCTGGGGATA
AGGGTGTTCTTCGCCTTGGCAGGTGTTGGCACTTTCTGTCCCCCCTCCCA
ACTTCTCCTTCTTTTTCCTTCCAACTCTGGCTTCTTTTTGGATCATTTGA
GTTACACTGTTTTTCCTCCCTCTGAAGCTGAATTTTCTAGAGTTCTGTTT
CTGTGTTCCATGATTTCCAGACCTGTTTACTTCC
TTTTTTTTTTNTTTNATNCTTTCTTCTTCCTCTATCTCTCTCCCTTTTNN
NNNAGNNNNNCCTCTTCTTTCNTTCTTCTCCCTTGGANNCTTTTAGGAAN
NNNNTTTCCTTAAGAGAANNNNNTTTCCATCTTCTCTCTAAAGAGAGTTC
TCTTAGGGAANNTTTTTTCCCTTTCCCTCACATATCCCCGGGGGAGAGAG
GGTTNNTNTNTTTNTNTTTTNNTNANNNANNNNCCCTTTTTTTTTTCCCC
CCCCACAAAAAGGAGAGGGGTCTTTTTTCTTTTCCCTTTTTNTTTTCTTT
NTTTTTTTGGTGGGTGTGGGGTTGGGTTTGTGTGTTTTANNCTNCCTTTT
TTTTTTTTTTCCCCTCCCCCCCCCCCTCTACAAACAAAGAAAAGGGGGGG
GGGTGTTCTTCTTATTTTCTTCTTTTTTTCTCCTTCTTCTTTCTTTTTCC
TCTTTCTCTTTCTCTTCTCCTCTCCCCTTTCTTCCTCCGCCCTCCTCTTC
CCCCCCTCTCTCCCCCTTCTTTCCCTCTCCTCTCCTCCTTTTTTTTTCCC
CCCCCCCTCCCCTCCCCCTCCTCCCCCCCTCCCCCACCCAAATTTTTTTA
CAATGGATTTCTCCACCCCCCCCCCCCCCCCCCTCTTGTGTGTTTGTTTT
ATTTTTTATTCATTCCCTCTTTTTCCCCTCTCCTCCCCCCTCCTTCCAAC
AACAAAAAAAAAAATACTNTNTTCTGTGGGTGCTCGCCCGGGTGTTTCTT
TTTCTCTCCCTCCTCCTCTCTCCTCTATCTTCCTTCTCTTTCTCTCTTTC
CCCTCTTTTTTCCCTCTCTTTTCCTCTCCCCCCTCTTNTCTTCCCCTCCT
ATTTTCCCTCCCCCTCCCTCCTTTCTCTTCTTTCTCCCCTTCCCCTTCTT
CTCTCTTCTTCTTTCTCTATCCCCTCCCCTTTTCCTCCCTCCCCCCTCGC
CCCTCTCCCTTTCTTCTTTCTTCTGCTCCCTCCTCCTCTCTCTTTCTGCT
TCTTTTTTTTCTTCTCTCGCGCCTGTACTCCTTTTCCCCCTCTCTCCCTC
CCTCTGGCCCCTCCTCTTCCTCTTCCTCTGTCTCTCTTCCTTCCTCCTCC
TTTGTTTCTCTCTTTTTCTCTCTCCCCCTTTCCACTCCTTGTTCCCTGCT
TTTTCGCCCTTCTTGCCCTCCACTTCTCTTCTCTCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_n21.b1 MSMg01no095_n21.b1 CHROMAT_FILE:
MSMg01no095_n21.b1 PHD_FILE: MSMg01no095_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:01 2005
         (318 letters)



>mm_chr1_53622245_53622963
          Length = 719

 Score =  538 bits (278), Expect = e-157
 Identities = 304/314 (96%), Gaps = 5/314 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcttgtagtc--tccgaactgatgtctgagcggacagtctaaacaggtctgcactg 65
           ||||||||||||||  |  ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 519 gaattcttgtagtcagt--gaactgatgtctgagaggacagtctaaacaggtctgcactg 462

                                                                       
Query: 66  tgcttattccttattacagatcttgtgatttcccattgtttgaaattttgcttcctaacc 125
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 461 tgcttattccttattaaagatcttgtgattttccattgtttgaaattttgcttcctaacc 402

                                                                       
Query: 126 aactgca-tttttttctgattgatcctaggaaaataatttagaaacaaagatgatcaatg 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aactgcattttttttctgattgatcctaggaaaataatttagaaacaaagatgatcaatg 342

                                                                       
Query: 185 ctggtttgcgatatggctatgaatatctgggaaattcccctagactagtcataaccccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctggtttgcgatatggctatgaatatctgggaaattcccctagactagtcataaccccac 282

                                                                       
Query: 245 tcacagaccgctgttacaggtaaaccctgccaaagacacgggagcaataacttacacata 304
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 281 tcacagaccgctgttacaggtaaaccctgccaaagacatgggagcaataacttacacaca 222

                         
Query: 305 cacacacacacaca 318
           ||||||||||||||
Sbjct: 221 cacacacacacaca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)